Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AL139156.3-201ENST00000454802 394 ntBASIC8.42□□□□□ -1.06
MSH6P52701 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC8.42□□□□□ -1.06
MSH6P52701 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC8.42□□□□□ -1.06
MSH6P52701 AL121579.2-201ENST00000555466 590 ntBASIC8.42□□□□□ -1.06
MSH6P52701 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC8.42□□□□□ -1.06
MSH6P52701 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC8.42□□□□□ -1.06
MSH6P52701 AP002884.5-201ENST00000595053 1132 ntBASIC8.42□□□□□ -1.06
MSH6P52701 AC097467.4-201ENST00000605504 141 ntBASIC8.42□□□□□ -1.06
MSH6P52701 AL445222.1-201ENST00000607259 628 ntBASIC8.42□□□□□ -1.06
MSH6P52701 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC8.42□□□□□ -1.06
MSH6P52701 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC8.42□□□□□ -1.06
MSH6P52701 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
MSH6P52701 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC8.42□□□□□ -1.06
MSH6P52701 MAPK10-344ENST00000641718 3746 ntBASIC8.42□□□□□ -1.06
MSH6P52701 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
MSH6P52701 AC025809.2-201ENST00000625085 1802 ntBASIC8.42□□□□□ -1.06
MSH6P52701 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
MSH6P52701 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
MSH6P52701 AC007620.2-201ENST00000600539 1697 ntTSL 5 BASIC8.41□□□□□ -1.06
MSH6P52701 NRXN1-248ENST00000636345 3595 ntTSL 5 BASIC8.41□□□□□ -1.06
MSH6P52701 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
MSH6P52701 FNDC7-201ENST00000370017 3332 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
MSH6P52701 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC8.41□□□□□ -1.06
MSH6P52701 AC100858.3-201ENST00000533516 1605 ntTSL 5 BASIC8.41□□□□□ -1.06
MSH6P52701 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC8.41□□□□□ -1.06
MSH6P52701 RNA5SP375-201ENST00000362975 119 ntBASIC8.41□□□□□ -1.06
MSH6P52701 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC8.41□□□□□ -1.06
MSH6P52701 AC009784.1-201ENST00000426484 460 ntBASIC8.41□□□□□ -1.06
MSH6P52701 FTH1P2-201ENST00000466086 412 ntBASIC8.41□□□□□ -1.06
MSH6P52701 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC8.41□□□□□ -1.06
MSH6P52701 CBX1P5-201ENST00000475330 559 ntBASIC8.41□□□□□ -1.06
MSH6P52701 AC004453.1-201ENST00000487895 408 ntBASIC8.41□□□□□ -1.06
MSH6P52701 RN7SL547P-201ENST00000490793 290 ntBASIC8.41□□□□□ -1.06
MSH6P52701 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
MSH6P52701 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC8.41□□□□□ -1.06
MSH6P52701 AC110056.1-201ENST00000525759 911 ntBASIC8.41□□□□□ -1.06
MSH6P52701 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC8.41□□□□□ -1.06
MSH6P52701 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC8.41□□□□□ -1.06
MSH6P52701 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
MSH6P52701 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC8.41□□□□□ -1.06
MSH6P52701 AC007683.2-201ENST00000624681 714 ntBASIC8.41□□□□□ -1.06
MSH6P52701 USP50-203ENST00000532404 1386 ntAPPRIS P2 TSL 5 BASIC8.41□□□□□ -1.06
MSH6P52701 CASC19-248ENST00000641674 1356 ntBASIC8.41□□□□□ -1.06
MSH6P52701 IRF6-201ENST00000367021 4306 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
MSH6P52701 SOX6-201ENST00000316399 8808 ntAPPRIS P3 TSL 5 BASIC8.41□□□□□ -1.06
MSH6P52701 SYTL5-201ENST00000297875 4722 ntTSL 5 BASIC8.41□□□□□ -1.06
MSH6P52701 AC092821.2-201ENST00000545710 2042 ntBASIC8.41□□□□□ -1.06
MSH6P52701 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC8.41□□□□□ -1.06
MSH6P52701 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
MSH6P52701 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC8.41□□□□□ -1.06
MSH6P52701 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC8.41□□□□□ -1.06
MSH6P52701 ADGRL3-204ENST00000506720 4962 ntAPPRIS ALT2 TSL 5 BASIC8.41□□□□□ -1.06
MSH6P52701 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC8.4□□□□□ -1.06
MSH6P52701 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
MSH6P52701 NRXN3-203ENST00000428277 4219 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
MSH6P52701 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC8.4□□□□□ -1.06
MSH6P52701 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC8.4□□□□□ -1.06
MSH6P52701 OR2M1P-201ENST00000318104 951 ntBASIC8.4□□□□□ -1.06
MSH6P52701 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC8.4□□□□□ -1.06
MSH6P52701 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC8.4□□□□□ -1.06
MSH6P52701 AC115223.1-201ENST00000466377 870 ntBASIC8.4□□□□□ -1.06
MSH6P52701 AC110716.1-201ENST00000506934 607 ntTSL 2 BASIC8.4□□□□□ -1.06
MSH6P52701 RNU6-615P-201ENST00000516065 106 ntBASIC8.4□□□□□ -1.06
MSH6P52701 LDHC-203ENST00000535809 757 ntTSL 5 BASIC8.4□□□□□ -1.06
MSH6P52701 LDHC-205ENST00000537486 583 ntTSL 5 BASIC8.4□□□□□ -1.06
MSH6P52701 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC8.4□□□□□ -1.06
MSH6P52701 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC8.4□□□□□ -1.06
MSH6P52701 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC8.4□□□□□ -1.06
MSH6P52701 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC8.4□□□□□ -1.06
MSH6P52701 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC8.4□□□□□ -1.06
MSH6P52701 OR7A1P-202ENST00000641542 1158 ntBASIC8.4□□□□□ -1.06
MSH6P52701 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC8.4□□□□□ -1.06
MSH6P52701 LINC02532-208ENST00000602621 2232 ntTSL 2 BASIC8.4□□□□□ -1.06
MSH6P52701 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC8.4□□□□□ -1.06
MSH6P52701 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
MSH6P52701 LINC02250-201ENST00000422117 2491 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
MSH6P52701 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.07
MSH6P52701 LCP1-201ENST00000323076 3787 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.07
MSH6P52701 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.07
MSH6P52701 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC8.4□□□□□ -1.07
MSH6P52701 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC8.4□□□□□ -1.07
MSH6P52701 ZNF260-202ENST00000523638 5666 ntAPPRIS P1 TSL 2 BASIC8.39□□□□□ -1.07
MSH6P52701 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
MSH6P52701 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC8.39□□□□□ -1.07
MSH6P52701 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
MSH6P52701 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC8.39□□□□□ -1.07
MSH6P52701 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC8.39□□□□□ -1.07
MSH6P52701 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC8.39□□□□□ -1.07
MSH6P52701 MIR550A3-201ENST00000390735 95 ntBASIC8.39□□□□□ -1.07
MSH6P52701 RN7SKP279-201ENST00000411383 298 ntBASIC8.39□□□□□ -1.07
MSH6P52701 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC8.39□□□□□ -1.07
MSH6P52701 RPL36P18-201ENST00000419316 318 ntBASIC8.39□□□□□ -1.07
MSH6P52701 RPS15AP30-201ENST00000420976 390 ntBASIC8.39□□□□□ -1.07
MSH6P52701 AL390119.1-201ENST00000440329 312 ntBASIC8.39□□□□□ -1.07
MSH6P52701 RPL21P133-201ENST00000443666 476 ntBASIC8.39□□□□□ -1.07
MSH6P52701 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC8.39□□□□□ -1.07
MSH6P52701 RPL35AP28-201ENST00000459730 331 ntBASIC8.39□□□□□ -1.07
MSH6P52701 OR7E157P-201ENST00000494376 911 ntBASIC8.39□□□□□ -1.07
MSH6P52701 RN7SL808P-201ENST00000496066 299 ntBASIC8.39□□□□□ -1.07
MSH6P52701 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC8.39□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms