Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC7.67□□□□□ -1.18
COL18A1P39060 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
COL18A1P39060 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC7.67□□□□□ -1.18
COL18A1P39060 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC7.67□□□□□ -1.18
COL18A1P39060 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC7.67□□□□□ -1.18
COL18A1P39060 AC024589.2-201ENST00000605642 1294 ntBASIC7.67□□□□□ -1.18
COL18A1P39060 AC007938.2-201ENST00000604666 2634 ntBASIC7.67□□□□□ -1.18
COL18A1P39060 MGAT5-201ENST00000281923 8144 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
COL18A1P39060 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC7.67□□□□□ -1.18
COL18A1P39060 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC7.67□□□□□ -1.18
COL18A1P39060 TANK-205ENST00000405852 2155 ntTSL 5 BASIC7.67□□□□□ -1.18
COL18A1P39060 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC7.67□□□□□ -1.18
COL18A1P39060 AC104447.1-201ENST00000624214 2124 ntBASIC7.67□□□□□ -1.18
COL18A1P39060 ACACB-203ENST00000377854 6588 ntTSL 5 BASIC7.67□□□□□ -1.18
COL18A1P39060 CSMD1-206ENST00000520002 11740 ntAPPRIS ALT2 TSL 5 BASIC7.67□□□□□ -1.18
COL18A1P39060 CSMD1-216ENST00000602557 11740 ntAPPRIS ALT2 TSL 5 BASIC7.67□□□□□ -1.18
COL18A1P39060 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC7.67□□□□□ -1.18
COL18A1P39060 LRRC8B-203ENST00000439853 7474 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
COL18A1P39060 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL18A1P39060 EYA3-203ENST00000373871 6085 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL18A1P39060 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC7.66□□□□□ -1.18
COL18A1P39060 GAPDHP42-201ENST00000406848 981 ntBASIC7.66□□□□□ -1.18
COL18A1P39060 AC023141.8-201ENST00000442554 208 ntBASIC7.66□□□□□ -1.18
COL18A1P39060 FAR2P1-206ENST00000449736 709 ntBASIC7.66□□□□□ -1.18
COL18A1P39060 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC7.66□□□□□ -1.18
COL18A1P39060 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC7.66□□□□□ -1.18
COL18A1P39060 CYP4F27P-201ENST00000514557 494 ntBASIC7.66□□□□□ -1.18
COL18A1P39060 AC021678.3-201ENST00000517893 476 ntBASIC7.66□□□□□ -1.18
COL18A1P39060 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC7.66□□□□□ -1.18
COL18A1P39060 DIO2-210ENST00000557010 6367 ntAPPRIS P1 TSL 2 BASIC7.66□□□□□ -1.18
COL18A1P39060 RBM22P12-201ENST00000567098 1255 ntBASIC7.66□□□□□ -1.18
COL18A1P39060 MIR4260-201ENST00000583107 67 ntBASIC7.66□□□□□ -1.18
COL18A1P39060 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC7.66□□□□□ -1.18
COL18A1P39060 AP002884.5-201ENST00000595053 1132 ntBASIC7.66□□□□□ -1.18
COL18A1P39060 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC7.66□□□□□ -1.18
COL18A1P39060 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC7.66□□□□□ -1.18
COL18A1P39060 LINC00261-202ENST00000564492 4912 ntTSL 3 BASIC7.66□□□□□ -1.18
COL18A1P39060 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
COL18A1P39060 MYLK-206ENST00000418370 7282 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
COL18A1P39060 ARL6-204ENST00000463745 4231 ntAPPRIS P1 TSL 2 BASIC7.66□□□□□ -1.18
COL18A1P39060 ACO1-201ENST00000309951 7466 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL18A1P39060 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC7.66□□□□□ -1.18
COL18A1P39060 EZH1-201ENST00000415827 4608 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
COL18A1P39060 COL6A4P1-202ENST00000487147 4317 ntBASIC7.66□□□□□ -1.18
COL18A1P39060 GOLGA6L6-201ENST00000619213 4013 ntAPPRIS P1 TSL 5 BASIC7.66□□□□□ -1.18
COL18A1P39060 KLF7-202ENST00000412414 7954 ntTSL 2 BASIC7.66□□□□□ -1.18
COL18A1P39060 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL18A1P39060 AC137056.2-201ENST00000624055 1958 ntBASIC7.66□□□□□ -1.18
COL18A1P39060 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
COL18A1P39060 MC4R-201ENST00000299766 1666 ntAPPRIS P1 BASIC7.66□□□□□ -1.18
COL18A1P39060 AL355377.1-201ENST00000621125 1653 ntBASIC7.66□□□□□ -1.18
COL18A1P39060 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC7.66□□□□□ -1.18
COL18A1P39060 NEDD4L-204ENST00000382850 8251 ntAPPRIS ALT2 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL18A1P39060 MFN1-205ENST00000471841 5224 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL18A1P39060 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC7.66□□□□□ -1.18
COL18A1P39060 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC7.66□□□□□ -1.18
COL18A1P39060 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
COL18A1P39060 RN7SKP115-201ENST00000363177 317 ntBASIC7.66□□□□□ -1.18
COL18A1P39060 RN7SKP28-201ENST00000364770 305 ntBASIC7.66□□□□□ -1.18
COL18A1P39060 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC7.66□□□□□ -1.18
COL18A1P39060 RPS6P23-201ENST00000413224 722 ntBASIC7.66□□□□□ -1.18
COL18A1P39060 MORF4L1P4-201ENST00000450245 976 ntBASIC7.66□□□□□ -1.18
COL18A1P39060 ACA64.4-201ENST00000459070 127 ntBASIC7.66□□□□□ -1.18
COL18A1P39060 LINC02218-201ENST00000503267 529 ntTSL 2 BASIC7.66□□□□□ -1.18
COL18A1P39060 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC7.66□□□□□ -1.18
COL18A1P39060 OR5D15P-201ENST00000531671 942 ntBASIC7.66□□□□□ -1.18
COL18A1P39060 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC7.66□□□□□ -1.18
COL18A1P39060 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC7.66□□□□□ -1.18
COL18A1P39060 AC108449.2-201ENST00000560865 552 ntTSL 3 BASIC7.66□□□□□ -1.18
COL18A1P39060 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC7.66□□□□□ -1.18
COL18A1P39060 AC012616.1-201ENST00000600294 197 ntBASIC7.66□□□□□ -1.18
COL18A1P39060 AC000068.2-201ENST00000608816 460 ntBASIC7.66□□□□□ -1.18
COL18A1P39060 AC008115.3-201ENST00000614874 549 ntBASIC7.66□□□□□ -1.18
COL18A1P39060 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC7.66□□□□□ -1.18
COL18A1P39060 SPEF2-211ENST00000509059 4707 ntAPPRIS ALT2 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL18A1P39060 HDAC9-214ENST00000441542 3210 ntAPPRIS P4 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL18A1P39060 THAP12P9-201ENST00000503971 2360 ntBASIC7.65□□□□□ -1.18
COL18A1P39060 AL353763.1-201ENST00000624467 1628 ntBASIC7.65□□□□□ -1.18
COL18A1P39060 HSD17B13-201ENST00000302219 2269 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
COL18A1P39060 C1GALT1-201ENST00000223122 6078 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
COL18A1P39060 ZNF331-203ENST00000449416 3817 ntAPPRIS P1 TSL 5 BASIC7.65□□□□□ -1.18
COL18A1P39060 NT5DC1-201ENST00000319550 6923 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
COL18A1P39060 EEF1A1P30-201ENST00000429708 1315 ntBASIC7.65□□□□□ -1.18
COL18A1P39060 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC7.65□□□□□ -1.18
COL18A1P39060 SPATA31A1-201ENST00000377647 4256 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
COL18A1P39060 AC103591.2-201ENST00000265259 766 ntBASIC7.65□□□□□ -1.18
COL18A1P39060 RPL23AP27-201ENST00000415161 451 ntBASIC7.65□□□□□ -1.18
COL18A1P39060 OR6D1P-201ENST00000436165 939 ntBASIC7.65□□□□□ -1.18
COL18A1P39060 AC091685.2-201ENST00000454924 864 ntBASIC7.65□□□□□ -1.18
COL18A1P39060 LDHBP2-201ENST00000456969 1005 ntBASIC7.65□□□□□ -1.18
COL18A1P39060 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC7.65□□□□□ -1.18
COL18A1P39060 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC7.65□□□□□ -1.18
COL18A1P39060 AC126615.2-201ENST00000553003 515 ntBASIC7.65□□□□□ -1.18
COL18A1P39060 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC7.65□□□□□ -1.18
COL18A1P39060 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC7.65□□□□□ -1.18
COL18A1P39060 AC015720.2-201ENST00000567709 334 ntBASIC7.65□□□□□ -1.18
COL18A1P39060 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC7.65□□□□□ -1.18
COL18A1P39060 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC7.65□□□□□ -1.18
COL18A1P39060 DROSHA-201ENST00000344624 5102 ntAPPRIS P4 TSL 5 BASIC7.65□□□□□ -1.19
COL18A1P39060 NSD2-208ENST00000420906 5109 ntTSL 1 (best) BASIC7.65□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms