Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 MIR3189-201ENST00000578735 73 ntBASIC6□□□□□ -1.45
SHMT2P34897 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC6□□□□□ -1.45
SHMT2P34897 AC011468.3-201ENST00000597886 332 ntTSL 3 BASIC6□□□□□ -1.45
SHMT2P34897 AC022106.1-201ENST00000612834 766 ntBASIC6□□□□□ -1.45
SHMT2P34897 Xist_exon4.1-201ENST00000615964 126 ntBASIC6□□□□□ -1.45
SHMT2P34897 UBA3-213ENST00000631029 123 ntTSL 5 BASIC6□□□□□ -1.45
SHMT2P34897 AL009031.1-202ENST00000632370 886 ntTSL 3 BASIC6□□□□□ -1.45
SHMT2P34897 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC6□□□□□ -1.45
SHMT2P34897 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC6□□□□□ -1.45
SHMT2P34897 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC6□□□□□ -1.45
SHMT2P34897 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC6□□□□□ -1.45
SHMT2P34897 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC6□□□□□ -1.45
SHMT2P34897 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC6□□□□□ -1.45
SHMT2P34897 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC6□□□□□ -1.45
SHMT2P34897 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC6□□□□□ -1.45
SHMT2P34897 ZFP42-201ENST00000326866 2651 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
SHMT2P34897 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
SHMT2P34897 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
SHMT2P34897 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC6□□□□□ -1.45
SHMT2P34897 EIF3EP1-201ENST00000433978 1316 ntBASIC5.99□□□□□ -1.45
SHMT2P34897 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
SHMT2P34897 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.99□□□□□ -1.45
SHMT2P34897 HSPD1P9-201ENST00000420325 1636 ntBASIC5.99□□□□□ -1.45
SHMT2P34897 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
SHMT2P34897 AL359091.1-201ENST00000449048 1734 ntBASIC5.99□□□□□ -1.45
SHMT2P34897 AC011416.1-201ENST00000514947 1732 ntBASIC5.99□□□□□ -1.45
SHMT2P34897 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
SHMT2P34897 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
SHMT2P34897 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC5.99□□□□□ -1.45
SHMT2P34897 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC5.99□□□□□ -1.45
SHMT2P34897 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC5.99□□□□□ -1.45
SHMT2P34897 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.99□□□□□ -1.45
SHMT2P34897 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC5.99□□□□□ -1.45
SHMT2P34897 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
SHMT2P34897 AC092692.1-201ENST00000623625 2595 ntBASIC5.99□□□□□ -1.45
SHMT2P34897 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC5.99□□□□□ -1.45
SHMT2P34897 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
SHMT2P34897 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC5.99□□□□□ -1.45
SHMT2P34897 TCF12-205ENST00000537840 1598 ntTSL 2 BASIC5.99□□□□□ -1.45
SHMT2P34897 AC104966.1-201ENST00000467010 1464 ntBASIC5.99□□□□□ -1.45
SHMT2P34897 CRP-204ENST00000368112 787 ntTSL 2 BASIC5.99□□□□□ -1.45
SHMT2P34897 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
SHMT2P34897 RNA5SP431-201ENST00000410312 120 ntBASIC5.99□□□□□ -1.45
SHMT2P34897 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC5.99□□□□□ -1.45
SHMT2P34897 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC5.99□□□□□ -1.45
SHMT2P34897 AC092651.1-201ENST00000426110 312 ntBASIC5.99□□□□□ -1.45
SHMT2P34897 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC5.99□□□□□ -1.45
SHMT2P34897 RPL6P30-201ENST00000443382 862 ntBASIC5.99□□□□□ -1.45
SHMT2P34897 AC097463.1-201ENST00000447288 481 ntBASIC5.99□□□□□ -1.45
SHMT2P34897 snoU13.29-201ENST00000459370 104 ntBASIC5.99□□□□□ -1.45
SHMT2P34897 RN7SL221P-201ENST00000466190 281 ntBASIC5.99□□□□□ -1.45
SHMT2P34897 RPL37P23-201ENST00000492641 294 ntBASIC5.99□□□□□ -1.45
SHMT2P34897 PRMT5P1-201ENST00000514351 598 ntBASIC5.99□□□□□ -1.45
SHMT2P34897 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC5.99□□□□□ -1.45
SHMT2P34897 AC016405.1-202ENST00000524348 758 ntTSL 3 BASIC5.99□□□□□ -1.45
SHMT2P34897 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC5.99□□□□□ -1.45
SHMT2P34897 AC007346.1-201ENST00000569208 867 ntBASIC5.99□□□□□ -1.45
SHMT2P34897 NPIPB1P-202ENST00000588786 828 ntBASIC5.99□□□□□ -1.45
SHMT2P34897 ZNF235-204ENST00000589799 955 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
SHMT2P34897 AC008555.7-201ENST00000605008 583 ntBASIC5.99□□□□□ -1.45
SHMT2P34897 AL021368.3-201ENST00000607119 578 ntBASIC5.99□□□□□ -1.45
SHMT2P34897 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC5.99□□□□□ -1.45
SHMT2P34897 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
SHMT2P34897 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC5.99□□□□□ -1.45
SHMT2P34897 USP40-202ENST00000409945 1946 ntTSL 2 BASIC5.99□□□□□ -1.45
SHMT2P34897 C14orf105-201ENST00000216445 3082 ntAPPRIS P3 TSL 1 (best) BASIC5.99□□□□□ -1.45
SHMT2P34897 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
SHMT2P34897 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
SHMT2P34897 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC5.99□□□□□ -1.45
SHMT2P34897 PDE4B-203ENST00000371045 3982 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
SHMT2P34897 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
SHMT2P34897 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC5.98□□□□□ -1.45
SHMT2P34897 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC5.98□□□□□ -1.45
SHMT2P34897 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.98□□□□□ -1.45
SHMT2P34897 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SHMT2P34897 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
SHMT2P34897 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SHMT2P34897 AP001541.1-201ENST00000623322 1904 ntBASIC5.98□□□□□ -1.45
SHMT2P34897 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
SHMT2P34897 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC5.98□□□□□ -1.45
SHMT2P34897 SNORA21-201ENST00000362423 132 ntBASIC5.98□□□□□ -1.45
SHMT2P34897 GNG5P2-201ENST00000372054 207 ntBASIC5.98□□□□□ -1.45
SHMT2P34897 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC5.98□□□□□ -1.45
SHMT2P34897 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC5.98□□□□□ -1.45
SHMT2P34897 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC5.98□□□□□ -1.45
SHMT2P34897 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC5.98□□□□□ -1.45
SHMT2P34897 AC069277.1-205ENST00000432743 630 ntTSL 5 BASIC5.98□□□□□ -1.45
SHMT2P34897 AC007278.2-201ENST00000436582 1200 ntTSL 3 BASIC5.98□□□□□ -1.45
SHMT2P34897 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC5.98□□□□□ -1.45
SHMT2P34897 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC5.98□□□□□ -1.45
SHMT2P34897 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC5.98□□□□□ -1.45
SHMT2P34897 OR52E7P-201ENST00000452394 933 ntBASIC5.98□□□□□ -1.45
SHMT2P34897 PPIAP7-201ENST00000454070 489 ntBASIC5.98□□□□□ -1.45
SHMT2P34897 AL022319.1-201ENST00000458183 1167 ntBASIC5.98□□□□□ -1.45
SHMT2P34897 OR7E99P-201ENST00000505750 922 ntBASIC5.98□□□□□ -1.45
SHMT2P34897 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
SHMT2P34897 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC5.98□□□□□ -1.45
SHMT2P34897 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC5.98□□□□□ -1.45
SHMT2P34897 AC009879.1-201ENST00000520029 839 ntBASIC5.98□□□□□ -1.45
SHMT2P34897 AP000620.1-201ENST00000527147 504 ntBASIC5.98□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms