Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC6.58□□□□□ -1.36
HDAC4P56524 WDFY3-AS1-201ENST00000510449 493 ntTSL 3 BASIC6.58□□□□□ -1.36
HDAC4P56524 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC6.58□□□□□ -1.36
HDAC4P56524 RN7SKP248-201ENST00000516278 305 ntBASIC6.58□□□□□ -1.36
HDAC4P56524 RNA5SP206-201ENST00000516703 121 ntBASIC6.58□□□□□ -1.36
HDAC4P56524 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC6.58□□□□□ -1.36
HDAC4P56524 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC6.58□□□□□ -1.36
HDAC4P56524 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC6.58□□□□□ -1.36
HDAC4P56524 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC6.58□□□□□ -1.36
HDAC4P56524 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC6.58□□□□□ -1.36
HDAC4P56524 AC125612.1-201ENST00000547580 377 ntBASIC6.58□□□□□ -1.36
HDAC4P56524 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC6.58□□□□□ -1.36
HDAC4P56524 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC6.58□□□□□ -1.36
HDAC4P56524 MIR3189-201ENST00000578735 73 ntBASIC6.58□□□□□ -1.36
HDAC4P56524 OOSP1P2-201ENST00000579644 351 ntBASIC6.58□□□□□ -1.36
HDAC4P56524 MIR4420-201ENST00000583944 77 ntBASIC6.58□□□□□ -1.36
HDAC4P56524 AL589935.1-201ENST00000602418 488 ntTSL 4 BASIC6.58□□□□□ -1.36
HDAC4P56524 BPIFA4P-204ENST00000605211 656 ntTSL 2 BASIC6.58□□□□□ -1.36
HDAC4P56524 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC6.58□□□□□ -1.36
HDAC4P56524 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC6.58□□□□□ -1.36
HDAC4P56524 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC6.58□□□□□ -1.36
HDAC4P56524 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC6.58□□□□□ -1.36
HDAC4P56524 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HDAC4P56524 AC027575.3-201ENST00000583058 2747 ntBASIC6.58□□□□□ -1.36
HDAC4P56524 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
HDAC4P56524 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
HDAC4P56524 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC6.58□□□□□ -1.36
HDAC4P56524 C11orf1-203ENST00000529270 1437 ntTSL 2 BASIC6.58□□□□□ -1.36
HDAC4P56524 CASC19-246ENST00000641625 1606 ntBASIC6.58□□□□□ -1.36
HDAC4P56524 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
HDAC4P56524 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
HDAC4P56524 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
HDAC4P56524 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
HDAC4P56524 PLN-201ENST00000357525 2001 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
HDAC4P56524 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
HDAC4P56524 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
HDAC4P56524 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
HDAC4P56524 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
HDAC4P56524 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC6.57□□□□□ -1.36
HDAC4P56524 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
HDAC4P56524 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC6.57□□□□□ -1.36
HDAC4P56524 OR51J1-201ENST00000332043 951 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
HDAC4P56524 RN7SKP187-201ENST00000365536 330 ntBASIC6.57□□□□□ -1.36
HDAC4P56524 OR5D16-201ENST00000378396 987 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
HDAC4P56524 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
HDAC4P56524 PRELID1P1-201ENST00000403549 660 ntBASIC6.57□□□□□ -1.36
HDAC4P56524 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
HDAC4P56524 RN7SKP146-201ENST00000410242 334 ntBASIC6.57□□□□□ -1.36
HDAC4P56524 OSTCP4-201ENST00000424397 449 ntBASIC6.57□□□□□ -1.36
HDAC4P56524 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC6.57□□□□□ -1.36
HDAC4P56524 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC6.57□□□□□ -1.36
HDAC4P56524 BMP6P1-201ENST00000431230 679 ntBASIC6.57□□□□□ -1.36
HDAC4P56524 RSL24D1P2-201ENST00000445584 366 ntBASIC6.57□□□□□ -1.36
HDAC4P56524 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC6.57□□□□□ -1.36
HDAC4P56524 NDUFB3-204ENST00000454214 547 ntAPPRIS P1 TSL 2 BASIC6.57□□□□□ -1.36
HDAC4P56524 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC6.57□□□□□ -1.36
HDAC4P56524 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC6.57□□□□□ -1.36
HDAC4P56524 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC6.57□□□□□ -1.36
HDAC4P56524 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC6.57□□□□□ -1.36
HDAC4P56524 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC6.57□□□□□ -1.36
HDAC4P56524 AC018607.1-201ENST00000518552 673 ntTSL 5 BASIC6.57□□□□□ -1.36
HDAC4P56524 AC025857.1-201ENST00000525252 377 ntBASIC6.57□□□□□ -1.36
HDAC4P56524 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC6.57□□□□□ -1.36
HDAC4P56524 DAAM1-208ENST00000556135 582 ntTSL 3 BASIC6.57□□□□□ -1.36
HDAC4P56524 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC6.57□□□□□ -1.36
HDAC4P56524 WBP1LP12-201ENST00000604449 331 ntBASIC6.57□□□□□ -1.36
HDAC4P56524 NDUFB9P1-201ENST00000604683 510 ntBASIC6.57□□□□□ -1.36
HDAC4P56524 LSM1P2-201ENST00000604911 322 ntBASIC6.57□□□□□ -1.36
HDAC4P56524 AC011891.2-201ENST00000604949 397 ntBASIC6.57□□□□□ -1.36
HDAC4P56524 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC6.57□□□□□ -1.36
HDAC4P56524 AC100814.1-201ENST00000606963 623 ntBASIC6.57□□□□□ -1.36
HDAC4P56524 MIR7159-201ENST00000620587 66 ntBASIC6.57□□□□□ -1.36
HDAC4P56524 AL122023.1-201ENST00000622847 530 ntBASIC6.57□□□□□ -1.36
HDAC4P56524 AC004836.1-201ENST00000623032 634 ntBASIC6.57□□□□□ -1.36
HDAC4P56524 TEX41-293ENST00000630451 690 ntTSL 5 BASIC6.57□□□□□ -1.36
HDAC4P56524 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC6.57□□□□□ -1.36
HDAC4P56524 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
HDAC4P56524 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
HDAC4P56524 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
HDAC4P56524 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
HDAC4P56524 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
HDAC4P56524 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
HDAC4P56524 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
HDAC4P56524 AL359976.1-201ENST00000418655 3528 ntBASIC6.56□□□□□ -1.36
HDAC4P56524 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
HDAC4P56524 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
HDAC4P56524 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
HDAC4P56524 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
HDAC4P56524 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC6.56□□□□□ -1.36
HDAC4P56524 RPL11P4-201ENST00000332269 436 ntBASIC6.56□□□□□ -1.36
HDAC4P56524 SNORD8-201ENST00000363915 110 ntBASIC6.56□□□□□ -1.36
HDAC4P56524 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
HDAC4P56524 RFPL3S-201ENST00000382084 1117 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
HDAC4P56524 YWHAZP4-201ENST00000392459 708 ntBASIC6.56□□□□□ -1.36
HDAC4P56524 AP003170.5-201ENST00000397185 335 ntBASIC6.56□□□□□ -1.36
HDAC4P56524 AC007568.1-201ENST00000422912 471 ntBASIC6.56□□□□□ -1.36
HDAC4P56524 AC006455.6-201ENST00000426192 893 ntBASIC6.56□□□□□ -1.36
HDAC4P56524 AC112492.2-201ENST00000432774 1030 ntBASIC6.56□□□□□ -1.36
HDAC4P56524 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC6.56□□□□□ -1.36
HDAC4P56524 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC6.56□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 91.6 ms