Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC7.31□□□□□ -1.24
COL6A1P12109 AC018607.1-201ENST00000518552 673 ntTSL 5 BASIC7.31□□□□□ -1.24
COL6A1P12109 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC7.31□□□□□ -1.24
COL6A1P12109 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC7.31□□□□□ -1.24
COL6A1P12109 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
COL6A1P12109 AC135279.1-201ENST00000543493 504 ntBASIC7.31□□□□□ -1.24
COL6A1P12109 RACGAP1P-201ENST00000550663 1879 ntBASIC7.31□□□□□ -1.24
COL6A1P12109 OTX2-203ENST00000554559 715 ntTSL 5 BASIC7.31□□□□□ -1.24
COL6A1P12109 AL049838.1-201ENST00000563647 981 ntBASIC7.31□□□□□ -1.24
COL6A1P12109 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
COL6A1P12109 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC7.31□□□□□ -1.24
COL6A1P12109 AC135178.4-201ENST00000585275 548 ntTSL 2 BASIC7.31□□□□□ -1.24
COL6A1P12109 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC7.31□□□□□ -1.24
COL6A1P12109 AC010327.2-201ENST00000587647 488 ntBASIC7.31□□□□□ -1.24
COL6A1P12109 DCAF13-210ENST00000618975 2038 ntTSL 2 BASIC7.31□□□□□ -1.24
COL6A1P12109 AC022079.1-201ENST00000621546 602 ntBASIC7.31□□□□□ -1.24
COL6A1P12109 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC7.31□□□□□ -1.24
COL6A1P12109 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC7.31□□□□□ -1.24
COL6A1P12109 GOLGA6L6-201ENST00000619213 4013 ntAPPRIS P1 TSL 5 BASIC7.31□□□□□ -1.24
COL6A1P12109 LINC00907-205ENST00000589068 1812 ntTSL 2 BASIC7.31□□□□□ -1.24
COL6A1P12109 CR788268.1-201ENST00000603931 1809 ntBASIC7.31□□□□□ -1.24
COL6A1P12109 BUB1-202ENST00000409311 3287 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
COL6A1P12109 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL6A1P12109 AL354854.1-201ENST00000455940 1363 ntBASIC7.31□□□□□ -1.24
COL6A1P12109 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL6A1P12109 NAMPTP1-201ENST00000440465 2514 ntBASIC7.31□□□□□ -1.24
COL6A1P12109 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL6A1P12109 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL6A1P12109 ERLIN2-201ENST00000276461 6073 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL6A1P12109 HP1BP3-201ENST00000312239 3938 ntAPPRIS P1 TSL 2 BASIC7.31□□□□□ -1.24
COL6A1P12109 DDX43P1-201ENST00000510713 1763 ntBASIC7.31□□□□□ -1.24
COL6A1P12109 FREM2-201ENST00000280481 16070 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL6A1P12109 OLFM4-201ENST00000219022 2897 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL6A1P12109 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL6A1P12109 EIF3EP1-201ENST00000433978 1316 ntBASIC7.3□□□□□ -1.24
COL6A1P12109 MTRNR2L8-201ENST00000536684 1303 ntAPPRIS P1 BASIC7.3□□□□□ -1.24
COL6A1P12109 ASB4-202ENST00000325885 3825 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL6A1P12109 Z97989.1-201ENST00000531702 2421 ntBASIC7.3□□□□□ -1.24
COL6A1P12109 HDAC9-202ENST00000405010 4239 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
COL6A1P12109 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC7.3□□□□□ -1.24
COL6A1P12109 SAR1A-206ENST00000431664 2810 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL6A1P12109 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL6A1P12109 HBS1L-206ENST00000415177 2636 ntTSL 5 BASIC7.3□□□□□ -1.24
COL6A1P12109 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL6A1P12109 RNA5SP284-201ENST00000384547 118 ntBASIC7.3□□□□□ -1.24
COL6A1P12109 PTGES3P2-201ENST00000407942 482 ntBASIC7.3□□□□□ -1.24
COL6A1P12109 AC069282.1-201ENST00000411911 526 ntBASIC7.3□□□□□ -1.24
COL6A1P12109 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC7.3□□□□□ -1.24
COL6A1P12109 AL356968.2-201ENST00000412769 1257 ntBASIC7.3□□□□□ -1.24
COL6A1P12109 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC7.3□□□□□ -1.24
COL6A1P12109 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC7.3□□□□□ -1.24
COL6A1P12109 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC7.3□□□□□ -1.24
COL6A1P12109 AC239367.3-201ENST00000428996 814 ntBASIC7.3□□□□□ -1.24
COL6A1P12109 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC7.3□□□□□ -1.24
COL6A1P12109 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC7.3□□□□□ -1.24
COL6A1P12109 HMGN1P5-201ENST00000448591 263 ntBASIC7.3□□□□□ -1.24
COL6A1P12109 FAM107B-217ENST00000478076 790 ntAPPRIS P1 TSL 4 BASIC7.3□□□□□ -1.24
COL6A1P12109 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC7.3□□□□□ -1.24
COL6A1P12109 QTRT2-212ENST00000485050 3844 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
COL6A1P12109 RPL19P11-201ENST00000495944 589 ntBASIC7.3□□□□□ -1.24
COL6A1P12109 AC105420.1-201ENST00000504389 582 ntBASIC7.3□□□□□ -1.24
COL6A1P12109 RNA5SP206-201ENST00000516703 121 ntBASIC7.3□□□□□ -1.24
COL6A1P12109 TEK-204ENST00000519097 3836 ntTSL 2 BASIC7.3□□□□□ -1.24
COL6A1P12109 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC7.3□□□□□ -1.24
COL6A1P12109 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC7.3□□□□□ -1.24
COL6A1P12109 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC7.3□□□□□ -1.24
COL6A1P12109 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC7.3□□□□□ -1.24
COL6A1P12109 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL6A1P12109 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC7.3□□□□□ -1.24
COL6A1P12109 AC122688.2-201ENST00000543922 585 ntTSL 3 BASIC7.3□□□□□ -1.24
COL6A1P12109 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC7.3□□□□□ -1.24
COL6A1P12109 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC7.3□□□□□ -1.24
COL6A1P12109 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC7.3□□□□□ -1.24
COL6A1P12109 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC7.3□□□□□ -1.24
COL6A1P12109 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC7.3□□□□□ -1.24
COL6A1P12109 AF230666.2-201ENST00000602328 725 ntBASIC7.3□□□□□ -1.24
COL6A1P12109 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC7.3□□□□□ -1.24
COL6A1P12109 AC022467.1-201ENST00000614738 749 ntBASIC7.3□□□□□ -1.24
COL6A1P12109 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC7.3□□□□□ -1.24
COL6A1P12109 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
COL6A1P12109 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC7.3□□□□□ -1.24
COL6A1P12109 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC7.3□□□□□ -1.24
COL6A1P12109 AC129778.1-202ENST00000623812 261 ntBASIC7.3□□□□□ -1.24
COL6A1P12109 AL591379.1-207ENST00000635982 261 ntBASIC7.3□□□□□ -1.24
COL6A1P12109 AMYH02020865.1-205ENST00000636189 261 ntBASIC7.3□□□□□ -1.24
COL6A1P12109 LINC02495-203ENST00000636704 242 ntBASIC7.3□□□□□ -1.24
COL6A1P12109 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC7.3□□□□□ -1.24
COL6A1P12109 CSDE1-218ENST00000610726 4312 ntTSL 5 BASIC7.3□□□□□ -1.24
COL6A1P12109 UNC5D-201ENST00000287272 8662 ntTSL 5 BASIC7.3□□□□□ -1.24
COL6A1P12109 MID1-202ENST00000380779 6044 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL6A1P12109 AC074141.1-201ENST00000588129 2995 ntBASIC7.3□□□□□ -1.24
COL6A1P12109 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
COL6A1P12109 LINC00649-203ENST00000427447 9124 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
COL6A1P12109 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC7.3□□□□□ -1.24
COL6A1P12109 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
COL6A1P12109 KCNN3-205ENST00000618040 13057 ntTSL 5 BASIC7.3□□□□□ -1.24
COL6A1P12109 AC123769.2-201ENST00000624332 5984 ntBASIC7.3□□□□□ -1.24
COL6A1P12109 DAZ3-201ENST00000315357 3277 ntAPPRIS ALT2 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL6A1P12109 DAZ2-201ENST00000382294 3277 ntAPPRIS ALT2 TSL 5 BASIC7.3□□□□□ -1.24
COL6A1P12109 DAZ4-204ENST00000415508 3277 ntTSL 5 BASIC7.3□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms