Protein–RNA interactions for Protein: P03886

MT-ND1, NADH-ubiquinone oxidoreductase chain 1, humanhuman

Predictions only

Length 318 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND1P03886 RNA5SP375-201ENST00000362975 119 ntBASIC5.71□□□□□ -1.5
MT-ND1P03886 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
MT-ND1P03886 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
MT-ND1P03886 RNA5SP231-201ENST00000410496 138 ntBASIC5.71□□□□□ -1.5
MT-ND1P03886 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC5.71□□□□□ -1.5
MT-ND1P03886 AL354868.1-201ENST00000417077 482 ntBASIC5.71□□□□□ -1.5
MT-ND1P03886 AC013268.2-201ENST00000420753 337 ntBASIC5.71□□□□□ -1.5
MT-ND1P03886 AC114498.1-201ENST00000423796 607 ntTSL 5 BASIC5.71□□□□□ -1.5
MT-ND1P03886 AL121578.1-201ENST00000428051 892 ntBASIC5.71□□□□□ -1.5
MT-ND1P03886 AC073410.1-201ENST00000435125 589 ntBASIC5.71□□□□□ -1.5
MT-ND1P03886 NPM1P48-201ENST00000436002 853 ntBASIC5.71□□□□□ -1.5
MT-ND1P03886 AC013403.1-201ENST00000436954 263 ntBASIC5.71□□□□□ -1.5
MT-ND1P03886 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
MT-ND1P03886 HMGN1P32-201ENST00000441744 256 ntBASIC5.71□□□□□ -1.5
MT-ND1P03886 GAPDHP23-201ENST00000444823 993 ntBASIC5.71□□□□□ -1.5
MT-ND1P03886 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC5.71□□□□□ -1.5
MT-ND1P03886 VN1R96P-201ENST00000446052 858 ntBASIC5.71□□□□□ -1.5
MT-ND1P03886 AC114752.1-201ENST00000448204 289 ntTSL 3 BASIC5.71□□□□□ -1.5
MT-ND1P03886 RPL31P11-202ENST00000454082 372 ntBASIC5.71□□□□□ -1.5
MT-ND1P03886 AC002075.1-201ENST00000457396 676 ntBASIC5.71□□□□□ -1.5
MT-ND1P03886 RN7SL643P-201ENST00000471845 291 ntBASIC5.71□□□□□ -1.5
MT-ND1P03886 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC5.71□□□□□ -1.5
MT-ND1P03886 AC093719.1-201ENST00000480427 441 ntBASIC5.71□□□□□ -1.5
MT-ND1P03886 RN7SL267P-201ENST00000485107 261 ntBASIC5.71□□□□□ -1.5
MT-ND1P03886 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC5.71□□□□□ -1.5
MT-ND1P03886 AC105389.1-201ENST00000510602 561 ntTSL 4 BASIC5.71□□□□□ -1.5
MT-ND1P03886 AC139713.1-202ENST00000512366 460 ntBASIC5.71□□□□□ -1.5
MT-ND1P03886 OR9G2P-201ENST00000533326 880 ntBASIC5.71□□□□□ -1.5
MT-ND1P03886 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC5.71□□□□□ -1.5
MT-ND1P03886 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC5.71□□□□□ -1.5
MT-ND1P03886 MIR6070-201ENST00000613967 103 ntBASIC5.71□□□□□ -1.5
MT-ND1P03886 AC009950.2-201ENST00000636548 183 ntBASIC5.71□□□□□ -1.5
MT-ND1P03886 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
MT-ND1P03886 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.71□□□□□ -1.5
MT-ND1P03886 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.5
MT-ND1P03886 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.71□□□□□ -1.5
MT-ND1P03886 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
MT-ND1P03886 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
MT-ND1P03886 AC109446.4-201ENST00000623235 2755 ntBASIC5.71□□□□□ -1.5
MT-ND1P03886 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
MT-ND1P03886 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
MT-ND1P03886 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MT-ND1P03886 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
MT-ND1P03886 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MT-ND1P03886 SULT1C3-201ENST00000329106 915 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
MT-ND1P03886 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
MT-ND1P03886 U3.10-201ENST00000364459 214 ntBASIC5.7□□□□□ -1.5
MT-ND1P03886 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.7□□□□□ -1.5
MT-ND1P03886 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
MT-ND1P03886 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC5.7□□□□□ -1.5
MT-ND1P03886 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC5.7□□□□□ -1.5
MT-ND1P03886 NPM1P23-201ENST00000440193 849 ntBASIC5.7□□□□□ -1.5
MT-ND1P03886 AC234771.4-201ENST00000441416 730 ntBASIC5.7□□□□□ -1.5
MT-ND1P03886 MORF4-201ENST00000447135 971 ntBASIC5.7□□□□□ -1.5
MT-ND1P03886 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC5.7□□□□□ -1.5
MT-ND1P03886 OSTCP1-201ENST00000455507 450 ntBASIC5.7□□□□□ -1.5
MT-ND1P03886 RN7SL352P-201ENST00000466002 277 ntBASIC5.7□□□□□ -1.5
MT-ND1P03886 RN7SL790P-201ENST00000474043 298 ntBASIC5.7□□□□□ -1.5
MT-ND1P03886 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC5.7□□□□□ -1.5
MT-ND1P03886 AC138409.2-202ENST00000507274 458 ntBASIC5.7□□□□□ -1.5
MT-ND1P03886 AC093664.1-201ENST00000511779 289 ntBASIC5.7□□□□□ -1.5
MT-ND1P03886 NPM1P21-201ENST00000513394 762 ntBASIC5.7□□□□□ -1.5
MT-ND1P03886 UBE2N-204ENST00000549833 960 ntTSL 3 BASIC5.7□□□□□ -1.5
MT-ND1P03886 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
MT-ND1P03886 AL049779.3-201ENST00000557141 606 ntBASIC5.7□□□□□ -1.5
MT-ND1P03886 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC5.7□□□□□ -1.5
MT-ND1P03886 AC023389.2-201ENST00000580031 955 ntBASIC5.7□□□□□ -1.5
MT-ND1P03886 AC005224.3-201ENST00000584683 2140 ntBASIC5.7□□□□□ -1.5
MT-ND1P03886 DYNLL1P1-201ENST00000595442 269 ntBASIC5.7□□□□□ -1.5
MT-ND1P03886 AC006262.3-201ENST00000597337 258 ntTSL 3 BASIC5.7□□□□□ -1.5
MT-ND1P03886 AC036176.3-201ENST00000602456 418 ntBASIC5.7□□□□□ -1.5
MT-ND1P03886 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC5.7□□□□□ -1.5
MT-ND1P03886 AC091059.2-201ENST00000623355 614 ntBASIC5.7□□□□□ -1.5
MT-ND1P03886 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
MT-ND1P03886 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
MT-ND1P03886 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MT-ND1P03886 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
MT-ND1P03886 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MT-ND1P03886 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.7□□□□□ -1.5
MT-ND1P03886 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC5.7□□□□□ -1.5
MT-ND1P03886 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.7□□□□□ -1.5
MT-ND1P03886 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MT-ND1P03886 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.7□□□□□ -1.5
MT-ND1P03886 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
MT-ND1P03886 FAM83B-201ENST00000306858 3167 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
MT-ND1P03886 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC5.69□□□□□ -1.5
MT-ND1P03886 CASC19-255ENST00000641733 1385 ntBASIC5.69□□□□□ -1.5
MT-ND1P03886 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
MT-ND1P03886 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
MT-ND1P03886 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
MT-ND1P03886 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
MT-ND1P03886 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
MT-ND1P03886 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
MT-ND1P03886 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC5.69□□□□□ -1.5
MT-ND1P03886 NADK2-201ENST00000282512 2507 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
MT-ND1P03886 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
MT-ND1P03886 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
MT-ND1P03886 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
MT-ND1P03886 CCL1-201ENST00000225842 592 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
MT-ND1P03886 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 89.9 ms