Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 LSM1P2-201ENST00000604911 322 ntBASIC5.53□□□□□ -1.52
SKA3Q8IX90 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC5.53□□□□□ -1.52
SKA3Q8IX90 MIR6811-201ENST00000620409 58 ntBASIC5.53□□□□□ -1.52
SKA3Q8IX90 MIR7159-201ENST00000620587 66 ntBASIC5.53□□□□□ -1.52
SKA3Q8IX90 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC5.53□□□□□ -1.52
SKA3Q8IX90 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC5.53□□□□□ -1.52
SKA3Q8IX90 BMP10-201ENST00000295379 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SKA3Q8IX90 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
SKA3Q8IX90 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC5.53□□□□□ -1.52
SKA3Q8IX90 PLN-201ENST00000357525 2001 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SKA3Q8IX90 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC5.53□□□□□ -1.52
SKA3Q8IX90 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SKA3Q8IX90 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC5.53□□□□□ -1.52
SKA3Q8IX90 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC5.53□□□□□ -1.52
SKA3Q8IX90 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SKA3Q8IX90 AC090220.1-201ENST00000593078 1699 ntBASIC5.53□□□□□ -1.52
SKA3Q8IX90 AC087516.1-201ENST00000561236 2428 ntBASIC5.53□□□□□ -1.52
SKA3Q8IX90 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SKA3Q8IX90 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SKA3Q8IX90 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SKA3Q8IX90 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.52□□□□□ -1.53
SKA3Q8IX90 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC5.52□□□□□ -1.53
SKA3Q8IX90 LINC02318-201ENST00000553785 1334 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SKA3Q8IX90 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
SKA3Q8IX90 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SKA3Q8IX90 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.52□□□□□ -1.53
SKA3Q8IX90 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SKA3Q8IX90 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SKA3Q8IX90 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SKA3Q8IX90 ECHDC1-202ENST00000368289 909 ntTSL 5 BASIC5.52□□□□□ -1.53
SKA3Q8IX90 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SKA3Q8IX90 UBE2F-204ENST00000409953 924 ntTSL 3 BASIC5.52□□□□□ -1.53
SKA3Q8IX90 AL121823.1-201ENST00000418369 741 ntTSL 3 BASIC5.52□□□□□ -1.53
SKA3Q8IX90 VN1R20P-201ENST00000425215 966 ntBASIC5.52□□□□□ -1.53
SKA3Q8IX90 CXCR2P1-202ENST00000443392 1074 ntBASIC5.52□□□□□ -1.53
SKA3Q8IX90 POU5F1P5-201ENST00000445059 658 ntBASIC5.52□□□□□ -1.53
SKA3Q8IX90 AC097359.1-201ENST00000447946 463 ntBASIC5.52□□□□□ -1.53
SKA3Q8IX90 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC5.52□□□□□ -1.53
SKA3Q8IX90 RBMY2BP-202ENST00000451071 1156 ntBASIC5.52□□□□□ -1.53
SKA3Q8IX90 RN7SL836P-201ENST00000476140 296 ntBASIC5.52□□□□□ -1.53
SKA3Q8IX90 RPL29P23-201ENST00000486188 442 ntBASIC5.52□□□□□ -1.53
SKA3Q8IX90 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC5.52□□□□□ -1.53
SKA3Q8IX90 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC5.52□□□□□ -1.53
SKA3Q8IX90 HMGN1P16-201ENST00000508308 283 ntBASIC5.52□□□□□ -1.53
SKA3Q8IX90 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC5.52□□□□□ -1.53
SKA3Q8IX90 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC5.52□□□□□ -1.53
SKA3Q8IX90 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC5.52□□□□□ -1.53
SKA3Q8IX90 MYL2-203ENST00000548438 664 ntTSL 3 BASIC5.52□□□□□ -1.53
SKA3Q8IX90 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC5.52□□□□□ -1.53
SKA3Q8IX90 MT1CP-201ENST00000567054 174 ntBASIC5.52□□□□□ -1.53
SKA3Q8IX90 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC5.52□□□□□ -1.53
SKA3Q8IX90 AC006924.1-201ENST00000610750 559 ntBASIC5.52□□□□□ -1.53
SKA3Q8IX90 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC5.52□□□□□ -1.53
SKA3Q8IX90 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SKA3Q8IX90 LINC01676-209ENST00000623043 896 ntTSL 4 BASIC5.52□□□□□ -1.53
SKA3Q8IX90 AC022726.2-201ENST00000634673 547 ntBASIC5.52□□□□□ -1.53
SKA3Q8IX90 5S_rRNA.29-201ENST00000641250 107 ntBASIC5.52□□□□□ -1.53
SKA3Q8IX90 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC5.52□□□□□ -1.53
SKA3Q8IX90 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SKA3Q8IX90 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SKA3Q8IX90 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SKA3Q8IX90 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
SKA3Q8IX90 AC140479.2-201ENST00000421567 3130 ntBASIC5.52□□□□□ -1.53
SKA3Q8IX90 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
SKA3Q8IX90 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SKA3Q8IX90 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC5.51□□□□□ -1.53
SKA3Q8IX90 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SKA3Q8IX90 UGT2B24P-201ENST00000514441 1597 ntBASIC5.51□□□□□ -1.53
SKA3Q8IX90 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
SKA3Q8IX90 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SKA3Q8IX90 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SKA3Q8IX90 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SKA3Q8IX90 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SKA3Q8IX90 POT1-202ENST00000393329 3950 ntTSL 5 BASIC5.51□□□□□ -1.53
SKA3Q8IX90 LYZL1-201ENST00000375500 815 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SKA3Q8IX90 MIR433-201ENST00000384837 93 ntBASIC5.51□□□□□ -1.53
SKA3Q8IX90 AC121334.1-201ENST00000396414 802 ntBASIC5.51□□□□□ -1.53
SKA3Q8IX90 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SKA3Q8IX90 AL445238.1-204ENST00000400311 463 ntBASIC5.51□□□□□ -1.53
SKA3Q8IX90 RPS17P17-201ENST00000419392 409 ntBASIC5.51□□□□□ -1.53
SKA3Q8IX90 RPS7P14-201ENST00000426405 583 ntBASIC5.51□□□□□ -1.53
SKA3Q8IX90 AC112492.2-201ENST00000432774 1030 ntBASIC5.51□□□□□ -1.53
SKA3Q8IX90 SOCS5P1-201ENST00000440415 949 ntBASIC5.51□□□□□ -1.53
SKA3Q8IX90 MORF4-201ENST00000447135 971 ntBASIC5.51□□□□□ -1.53
SKA3Q8IX90 MAGI2-AS3-210ENST00000448636 798 ntTSL 5 BASIC5.51□□□□□ -1.53
SKA3Q8IX90 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
SKA3Q8IX90 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC5.51□□□□□ -1.53
SKA3Q8IX90 RN7SL552P-201ENST00000462094 276 ntBASIC5.51□□□□□ -1.53
SKA3Q8IX90 H3F3AP5-201ENST00000475267 429 ntBASIC5.51□□□□□ -1.53
SKA3Q8IX90 MARK2P8-201ENST00000476069 952 ntBASIC5.51□□□□□ -1.53
SKA3Q8IX90 RN7SL326P-201ENST00000477493 296 ntBASIC5.51□□□□□ -1.53
SKA3Q8IX90 AC114728.1-201ENST00000488289 483 ntBASIC5.51□□□□□ -1.53
SKA3Q8IX90 LINC02114-201ENST00000503757 801 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SKA3Q8IX90 AC084048.1-201ENST00000505494 640 ntTSL 3 BASIC5.51□□□□□ -1.53
SKA3Q8IX90 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC5.51□□□□□ -1.53
SKA3Q8IX90 OR4D12P-201ENST00000509361 911 ntBASIC5.51□□□□□ -1.53
SKA3Q8IX90 KHDC1P1-201ENST00000511053 508 ntBASIC5.51□□□□□ -1.53
SKA3Q8IX90 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC5.51□□□□□ -1.53
SKA3Q8IX90 SNORA70.11-201ENST00000515987 138 ntBASIC5.51□□□□□ -1.53
SKA3Q8IX90 SNORA70.13-201ENST00000516116 138 ntBASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms