Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 SPECC1-205ENST00000395529 4971 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
PRKDCP78527 ZNF587-201ENST00000339656 6882 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
PRKDCP78527 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC4.11□□□□□ -1.75
PRKDCP78527 BGLT3-201ENST00000564523 994 ntBASIC4.11□□□□□ -1.75
PRKDCP78527 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
PRKDCP78527 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC4.11□□□□□ -1.75
PRKDCP78527 AC025574.2-201ENST00000615621 514 ntBASIC4.11□□□□□ -1.75
PRKDCP78527 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC4.11□□□□□ -1.75
PRKDCP78527 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
PRKDCP78527 AREL1-201ENST00000356357 5456 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
PRKDCP78527 RBM20-201ENST00000369519 7233 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
PRKDCP78527 ZBTB11-201ENST00000312938 6020 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
PRKDCP78527 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC4.11□□□□□ -1.75
PRKDCP78527 WDR44-201ENST00000254029 4111 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
PRKDCP78527 OSGEPL1-207ENST00000522700 1779 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
PRKDCP78527 AP000866.6-201ENST00000638898 3579 ntBASIC4.11□□□□□ -1.75
PRKDCP78527 ACSS3-203ENST00000548058 9254 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
PRKDCP78527 AC114947.2-201ENST00000565748 2125 ntBASIC4.11□□□□□ -1.75
PRKDCP78527 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
PRKDCP78527 BIN2P1-201ENST00000504996 1530 ntBASIC4.11□□□□□ -1.75
PRKDCP78527 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
PRKDCP78527 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
PRKDCP78527 OR4Q3-202ENST00000642117 2165 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
PRKDCP78527 RNA5SP388-201ENST00000362584 119 ntBASIC4.11□□□□□ -1.75
PRKDCP78527 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC4.11□□□□□ -1.75
PRKDCP78527 AL359837.1-201ENST00000381357 287 ntBASIC4.11□□□□□ -1.75
PRKDCP78527 MIR199B-201ENST00000384849 110 ntBASIC4.11□□□□□ -1.75
PRKDCP78527 RNU11-6P-201ENST00000391127 133 ntBASIC4.11□□□□□ -1.75
PRKDCP78527 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC4.11□□□□□ -1.75
PRKDCP78527 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC4.11□□□□□ -1.75
PRKDCP78527 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC4.11□□□□□ -1.75
PRKDCP78527 OR7A15P-201ENST00000449848 1009 ntBASIC4.11□□□□□ -1.75
PRKDCP78527 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC4.11□□□□□ -1.75
PRKDCP78527 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC4.11□□□□□ -1.75
PRKDCP78527 AC139365.2-201ENST00000517972 253 ntBASIC4.11□□□□□ -1.75
PRKDCP78527 AC109635.6-201ENST00000525487 1113 ntBASIC4.11□□□□□ -1.75
PRKDCP78527 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC4.11□□□□□ -1.75
PRKDCP78527 CCR9-201ENST00000355983 2653 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
PRKDCP78527 SORBS1-211ENST00000371247 7354 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
PRKDCP78527 BCAT1-201ENST00000261192 9674 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
PRKDCP78527 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC4.11□□□□□ -1.75
PRKDCP78527 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC4.11□□□□□ -1.75
PRKDCP78527 TMCO5A-205ENST00000559502 1939 ntAPPRIS ALT2 TSL 2 BASIC4.11□□□□□ -1.75
PRKDCP78527 STARD5-201ENST00000302824 4871 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
PRKDCP78527 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
PRKDCP78527 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC4.11□□□□□ -1.75
PRKDCP78527 PRELID1P2-201ENST00000407805 396 ntBASIC4.11□□□□□ -1.75
PRKDCP78527 RN7SKP100-201ENST00000411258 284 ntBASIC4.11□□□□□ -1.75
PRKDCP78527 PTCD2P2-201ENST00000415579 1095 ntBASIC4.11□□□□□ -1.75
PRKDCP78527 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC4.11□□□□□ -1.75
PRKDCP78527 RN7SL447P-201ENST00000494711 245 ntBASIC4.11□□□□□ -1.75
PRKDCP78527 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC4.11□□□□□ -1.75
PRKDCP78527 AL109766.1-201ENST00000555080 552 ntBASIC4.11□□□□□ -1.75
PRKDCP78527 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC4.11□□□□□ -1.75
PRKDCP78527 MIR4277-201ENST00000578298 84 ntBASIC4.11□□□□□ -1.75
PRKDCP78527 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
PRKDCP78527 AC091905.4-201ENST00000623432 202 ntBASIC4.11□□□□□ -1.75
PRKDCP78527 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC4.11□□□□□ -1.75
PRKDCP78527 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
PRKDCP78527 SLC11A2-203ENST00000394904 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
PRKDCP78527 LINC02044-201ENST00000490139 2502 ntTSL 2 BASIC4.11□□□□□ -1.75
PRKDCP78527 THBS1-201ENST00000260356 7775 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
PRKDCP78527 ADTRP-203ENST00000414691 2058 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
PRKDCP78527 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
PRKDCP78527 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
PRKDCP78527 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
PRKDCP78527 ZNF83-211ENST00000597597 4442 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
PRKDCP78527 AC008937.3-201ENST00000606813 1700 ntBASIC4.11□□□□□ -1.75
PRKDCP78527 AC008560.1-201ENST00000510585 1766 ntAPPRIS P5 TSL 2 BASIC4.11□□□□□ -1.75
PRKDCP78527 BAZ2A-211ENST00000549884 6050 ntAPPRIS ALT2 TSL 2 BASIC4.11□□□□□ -1.75
PRKDCP78527 TRIM44-201ENST00000299413 12964 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
PRKDCP78527 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC4.1□□□□□ -1.75
PRKDCP78527 RPL10P10-201ENST00000403509 664 ntBASIC4.1□□□□□ -1.75
PRKDCP78527 AL451062.2-201ENST00000427515 271 ntBASIC4.1□□□□□ -1.75
PRKDCP78527 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC4.1□□□□□ -1.75
PRKDCP78527 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC4.1□□□□□ -1.75
PRKDCP78527 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC4.1□□□□□ -1.75
PRKDCP78527 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.1□□□□□ -1.75
PRKDCP78527 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC4.1□□□□□ -1.75
PRKDCP78527 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
PRKDCP78527 AP002373.2-201ENST00000541631 1060 ntBASIC4.1□□□□□ -1.75
PRKDCP78527 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC4.1□□□□□ -1.75
PRKDCP78527 ABCA6-201ENST00000284425 5300 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
PRKDCP78527 CASP8-203ENST00000323492 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
PRKDCP78527 LRRC55-201ENST00000497933 5410 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
PRKDCP78527 ACOT11-202ENST00000371316 6369 ntAPPRIS P4 TSL 1 (best) BASIC4.1□□□□□ -1.75
PRKDCP78527 RACGAP1-221ENST00000551016 2193 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
PRKDCP78527 TACC2-212ENST00000453444 9158 ntTSL 5 BASIC4.1□□□□□ -1.75
PRKDCP78527 COL28A1-201ENST00000399429 4277 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
PRKDCP78527 ZAN-204ENST00000546292 8378 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
PRKDCP78527 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC4.1□□□□□ -1.75
PRKDCP78527 AC007359.1-202ENST00000419158 2939 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
PRKDCP78527 AC008175.1-201ENST00000446299 2939 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
PRKDCP78527 PROM1-206ENST00000505450 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
PRKDCP78527 LINC00506-203ENST00000629295 4300 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
PRKDCP78527 NUFIP1-201ENST00000379161 3492 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
PRKDCP78527 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
PRKDCP78527 RNU6ATAC21P-201ENST00000408656 126 ntBASIC4.1□□□□□ -1.75
PRKDCP78527 RPS6P23-201ENST00000413224 722 ntBASIC4.1□□□□□ -1.75
PRKDCP78527 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms