Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SOX3P41225 DCN-218ENST00000551354 2924 ntTSL 3 BASIC5.81□□□□□ -1.48
SOX3P41225 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SOX3P41225 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SOX3P41225 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
SOX3P41225 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SOX3P41225 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SOX3P41225 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
SOX3P41225 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SOX3P41225 SHQ1P1-201ENST00000437111 1544 ntBASIC5.81□□□□□ -1.48
SOX3P41225 RNA5SP346-201ENST00000363541 121 ntBASIC5.81□□□□□ -1.48
SOX3P41225 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
SOX3P41225 RNU6-167P-201ENST00000384292 106 ntBASIC5.81□□□□□ -1.48
SOX3P41225 CCL20-202ENST00000409189 839 ntAPPRIS ALT1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SOX3P41225 RNA5SP431-201ENST00000410312 120 ntBASIC5.81□□□□□ -1.48
SOX3P41225 HMGA1P8-201ENST00000414130 321 ntBASIC5.81□□□□□ -1.48
SOX3P41225 RPS26P38-201ENST00000414476 348 ntBASIC5.81□□□□□ -1.48
SOX3P41225 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC5.81□□□□□ -1.48
SOX3P41225 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC5.81□□□□□ -1.48
SOX3P41225 HMGB1P7-201ENST00000450921 612 ntBASIC5.81□□□□□ -1.48
SOX3P41225 AC117394.1-201ENST00000477323 567 ntBASIC5.81□□□□□ -1.48
SOX3P41225 RPL12P30-201ENST00000488389 499 ntBASIC5.81□□□□□ -1.48
SOX3P41225 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC5.81□□□□□ -1.48
SOX3P41225 LDHAP1-201ENST00000509421 992 ntBASIC5.81□□□□□ -1.48
SOX3P41225 AC095052.1-201ENST00000509955 863 ntBASIC5.81□□□□□ -1.48
SOX3P41225 OR4A40P-201ENST00000533878 948 ntBASIC5.81□□□□□ -1.48
SOX3P41225 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC5.81□□□□□ -1.48
SOX3P41225 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SOX3P41225 AL845552.1-201ENST00000556820 323 ntBASIC5.81□□□□□ -1.48
SOX3P41225 AC026826.3-201ENST00000561747 158 ntBASIC5.81□□□□□ -1.48
SOX3P41225 OR4H6P-201ENST00000563771 921 ntBASIC5.81□□□□□ -1.48
SOX3P41225 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC5.81□□□□□ -1.48
SOX3P41225 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC5.81□□□□□ -1.48
SOX3P41225 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SOX3P41225 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC5.81□□□□□ -1.48
SOX3P41225 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC5.81□□□□□ -1.48
SOX3P41225 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC5.81□□□□□ -1.48
SOX3P41225 AC011468.3-201ENST00000597886 332 ntTSL 3 BASIC5.81□□□□□ -1.48
SOX3P41225 LAPTM4BP2-201ENST00000604542 446 ntBASIC5.81□□□□□ -1.48
SOX3P41225 AC097641.3-201ENST00000613523 464 ntBASIC5.81□□□□□ -1.48
SOX3P41225 AP001052.1-201ENST00000626421 99 ntBASIC5.81□□□□□ -1.48
SOX3P41225 AC073488.6-201ENST00000632293 754 ntBASIC5.81□□□□□ -1.48
SOX3P41225 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC5.81□□□□□ -1.48
SOX3P41225 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SOX3P41225 OFD1P17-201ENST00000437639 3018 ntBASIC5.81□□□□□ -1.48
SOX3P41225 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
SOX3P41225 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SOX3P41225 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
SOX3P41225 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.8□□□□□ -1.48
SOX3P41225 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.8□□□□□ -1.48
SOX3P41225 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC5.8□□□□□ -1.48
SOX3P41225 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
SOX3P41225 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SOX3P41225 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC5.8□□□□□ -1.48
SOX3P41225 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SOX3P41225 BIN2P1-201ENST00000504996 1530 ntBASIC5.8□□□□□ -1.48
SOX3P41225 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
SOX3P41225 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
SOX3P41225 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC5.8□□□□□ -1.48
SOX3P41225 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC5.8□□□□□ -1.48
SOX3P41225 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC5.8□□□□□ -1.48
SOX3P41225 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC5.8□□□□□ -1.48
SOX3P41225 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
SOX3P41225 RAB5CP1-201ENST00000395972 580 ntBASIC5.8□□□□□ -1.48
SOX3P41225 RN7SKP121-201ENST00000410842 305 ntBASIC5.8□□□□□ -1.48
SOX3P41225 RN7SKP108-201ENST00000411367 328 ntBASIC5.8□□□□□ -1.48
SOX3P41225 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC5.8□□□□□ -1.48
SOX3P41225 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC5.8□□□□□ -1.48
SOX3P41225 RPS7P14-201ENST00000426405 583 ntBASIC5.8□□□□□ -1.48
SOX3P41225 AL354707.3-201ENST00000427308 331 ntBASIC5.8□□□□□ -1.48
SOX3P41225 RPSAP65-201ENST00000429660 595 ntBASIC5.8□□□□□ -1.48
SOX3P41225 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC5.8□□□□□ -1.48
SOX3P41225 AC007278.2-201ENST00000436582 1200 ntTSL 3 BASIC5.8□□□□□ -1.48
SOX3P41225 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SOX3P41225 AC010240.2-201ENST00000445363 1205 ntBASIC5.8□□□□□ -1.48
SOX3P41225 BCAP29-207ENST00000445771 1157 ntTSL 5 BASIC5.8□□□□□ -1.48
SOX3P41225 AC103563.5-201ENST00000455643 364 ntBASIC5.8□□□□□ -1.48
SOX3P41225 SNX18P26-201ENST00000458433 740 ntBASIC5.8□□□□□ -1.48
SOX3P41225 RN7SL326P-201ENST00000477493 296 ntBASIC5.8□□□□□ -1.48
SOX3P41225 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SOX3P41225 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC5.8□□□□□ -1.48
SOX3P41225 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC5.8□□□□□ -1.48
SOX3P41225 NATP-201ENST00000523491 878 ntBASIC5.8□□□□□ -1.48
SOX3P41225 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC5.8□□□□□ -1.48
SOX3P41225 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SOX3P41225 AC009120.3-201ENST00000563335 499 ntBASIC5.8□□□□□ -1.48
SOX3P41225 AC002519.2-203ENST00000567043 837 ntBASIC5.8□□□□□ -1.48
SOX3P41225 GLYATL1P2-202ENST00000588046 902 ntBASIC5.8□□□□□ -1.48
SOX3P41225 AC124916.2-201ENST00000604416 224 ntBASIC5.8□□□□□ -1.48
SOX3P41225 AL445649.1-201ENST00000615941 691 ntBASIC5.8□□□□□ -1.48
SOX3P41225 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC5.8□□□□□ -1.48
SOX3P41225 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC5.8□□□□□ -1.48
SOX3P41225 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC5.8□□□□□ -1.48
SOX3P41225 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
SOX3P41225 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC5.8□□□□□ -1.48
SOX3P41225 CAP1P2-201ENST00000417455 1409 ntBASIC5.8□□□□□ -1.48
SOX3P41225 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
SOX3P41225 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SOX3P41225 TINAG-201ENST00000259782 1754 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
SOX3P41225 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms