Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC7.44□□□□□ -1.22
MSX1P28360 AC138123.3-201ENST00000551928 791 ntTSL 5 BASIC7.44□□□□□ -1.22
MSX1P28360 AC009779.4-201ENST00000554248 611 ntBASIC7.44□□□□□ -1.22
MSX1P28360 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC7.44□□□□□ -1.22
MSX1P28360 AC084782.2-201ENST00000561934 839 ntTSL 3 BASIC7.44□□□□□ -1.22
MSX1P28360 AC090287.1-201ENST00000578374 291 ntBASIC7.44□□□□□ -1.22
MSX1P28360 ACP5-208ENST00000590420 301 ntTSL 5 BASIC7.44□□□□□ -1.22
MSX1P28360 AC093388.1-201ENST00000609166 430 ntBASIC7.44□□□□□ -1.22
MSX1P28360 AL592295.2-201ENST00000612578 206 ntBASIC7.44□□□□□ -1.22
MSX1P28360 AL121890.2-201ENST00000617644 465 ntBASIC7.44□□□□□ -1.22
MSX1P28360 AC108724.2-201ENST00000634593 290 ntBASIC7.44□□□□□ -1.22
MSX1P28360 MIR6863-201ENST00000636112 90 ntBASIC7.44□□□□□ -1.22
MSX1P28360 AC241377.2-202ENST00000636462 997 ntBASIC7.44□□□□□ -1.22
MSX1P28360 AC241585.4-201ENST00000640951 686 ntBASIC7.44□□□□□ -1.22
MSX1P28360 OR9K2-204ENST00000641374 1122 ntAPPRIS P1 BASIC7.44□□□□□ -1.22
MSX1P28360 MGAT4A-201ENST00000264968 8432 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
MSX1P28360 MAPK10-285ENST00000641207 2746 ntBASIC7.44□□□□□ -1.22
MSX1P28360 GBA3-203ENST00000508166 2164 ntAPPRIS P5 TSL 1 (best) BASIC7.44□□□□□ -1.22
MSX1P28360 AFF1-211ENST00000544085 3644 ntAPPRIS ALT2 TSL 5 BASIC7.44□□□□□ -1.22
MSX1P28360 AL049646.1-201ENST00000457009 2490 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
MSX1P28360 FHL5-203ENST00000541107 1904 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
MSX1P28360 CLCN3P1-202ENST00000609203 1944 ntTSL 2 BASIC7.44□□□□□ -1.22
MSX1P28360 AL353052.2-201ENST00000441459 2241 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
MSX1P28360 FUT10-206ENST00000518672 3115 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
MSX1P28360 ZNF317-201ENST00000247956 4073 ntAPPRIS P3 TSL 1 (best) BASIC7.44□□□□□ -1.22
MSX1P28360 BCL9P1-201ENST00000506012 2561 ntBASIC7.44□□□□□ -1.22
MSX1P28360 MET-204ENST00000436117 2295 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
MSX1P28360 ABCA9-201ENST00000340001 6514 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
MSX1P28360 ASB8-201ENST00000317697 2615 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
MSX1P28360 MAPK10-280ENST00000641166 2684 ntAPPRIS ALT1 BASIC7.44□□□□□ -1.22
MSX1P28360 MYOCD-203ENST00000425538 8466 ntAPPRIS ALT2 TSL 1 (best) BASIC7.43□□□□□ -1.22
MSX1P28360 DPY19L3-202ENST00000392250 5998 ntAPPRIS P1 TSL 5 BASIC7.43□□□□□ -1.22
MSX1P28360 UNC79-202ENST00000393151 7908 ntTSL 5 BASIC7.43□□□□□ -1.22
MSX1P28360 HDAC9-212ENST00000432645 3099 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
MSX1P28360 OCLN-205ENST00000538151 5391 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
MSX1P28360 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC7.43□□□□□ -1.22
MSX1P28360 AL049844.3-201ENST00000454207 1496 ntAPPRIS P1 TSL 2 BASIC7.43□□□□□ -1.22
MSX1P28360 PIWIL4-201ENST00000299001 3199 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
MSX1P28360 OAT-208ENST00000539214 1864 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
MSX1P28360 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC7.43□□□□□ -1.22
MSX1P28360 KLRC1-203ENST00000408006 1559 ntAPPRIS ALT2 TSL 1 (best) BASIC7.43□□□□□ -1.22
MSX1P28360 AC022306.1-201ENST00000560489 1562 ntBASIC7.43□□□□□ -1.22
MSX1P28360 LINC00662-203ENST00000586954 2254 ntTSL 2 BASIC7.43□□□□□ -1.22
MSX1P28360 SLC5A1-204ENST00000543737 4752 ntTSL 2 BASIC7.43□□□□□ -1.22
MSX1P28360 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
MSX1P28360 PTBP2-203ENST00000426398 3027 ntAPPRIS P3 TSL 1 (best) BASIC7.43□□□□□ -1.22
MSX1P28360 ZNF840P-201ENST00000504759 1996 ntBASIC7.43□□□□□ -1.22
MSX1P28360 AL449283.1-201ENST00000602631 3403 ntBASIC7.43□□□□□ -1.22
MSX1P28360 PLCE1-AS2-202ENST00000432782 1612 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
MSX1P28360 AC010132.2-201ENST00000295493 1043 ntBASIC7.43□□□□□ -1.22
MSX1P28360 METTL21EP-201ENST00000298105 713 ntBASIC7.43□□□□□ -1.22
MSX1P28360 OR2T6-201ENST00000355728 927 ntAPPRIS P1 BASIC7.43□□□□□ -1.22
MSX1P28360 Y_RNA.295-201ENST00000364918 102 ntBASIC7.43□□□□□ -1.22
MSX1P28360 AC007066.1-201ENST00000392902 381 ntBASIC7.43□□□□□ -1.22
MSX1P28360 MIR1272-201ENST00000408106 129 ntBASIC7.43□□□□□ -1.22
MSX1P28360 AL603650.1-201ENST00000412680 240 ntBASIC7.43□□□□□ -1.22
MSX1P28360 LINC01347-201ENST00000417964 355 ntBASIC7.43□□□□□ -1.22
MSX1P28360 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC7.43□□□□□ -1.22
MSX1P28360 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC7.43□□□□□ -1.22
MSX1P28360 RPSAP59-201ENST00000421048 890 ntBASIC7.43□□□□□ -1.22
MSX1P28360 SLIT1-AS1-201ENST00000424428 689 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
MSX1P28360 VN1R20P-201ENST00000425215 966 ntBASIC7.43□□□□□ -1.22
MSX1P28360 TIMM9P3-201ENST00000428659 274 ntBASIC7.43□□□□□ -1.22
MSX1P28360 RPL34P27-201ENST00000428810 349 ntBASIC7.43□□□□□ -1.22
MSX1P28360 YWHAEP5-201ENST00000431545 765 ntBASIC7.43□□□□□ -1.22
MSX1P28360 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC7.43□□□□□ -1.22
MSX1P28360 RPS25P9-201ENST00000435591 252 ntBASIC7.43□□□□□ -1.22
MSX1P28360 AC098828.1-201ENST00000436164 440 ntBASIC7.43□□□□□ -1.22
MSX1P28360 NEFLP1-201ENST00000436364 984 ntBASIC7.43□□□□□ -1.22
MSX1P28360 LINC00578-201ENST00000439009 542 ntTSL 4 BASIC7.43□□□□□ -1.22
MSX1P28360 RPS4XP4-201ENST00000443195 763 ntBASIC7.43□□□□□ -1.22
MSX1P28360 AL157827.1-201ENST00000447622 132 ntBASIC7.43□□□□□ -1.22
MSX1P28360 PDSS1P2-201ENST00000449397 678 ntBASIC7.43□□□□□ -1.22
MSX1P28360 LINC00572-201ENST00000450264 575 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
MSX1P28360 OR2M3-201ENST00000456743 1061 ntAPPRIS P1 BASIC7.43□□□□□ -1.22
MSX1P28360 OR52A4P-201ENST00000472867 958 ntBASIC7.43□□□□□ -1.22
MSX1P28360 ACTG1P13-201ENST00000486987 1043 ntBASIC7.43□□□□□ -1.22
MSX1P28360 CSF2RA-217ENST00000494969 489 ntTSL 5 BASIC7.43□□□□□ -1.22
MSX1P28360 UGT2A3P7-201ENST00000510485 734 ntBASIC7.43□□□□□ -1.22
MSX1P28360 AC068134.3-201ENST00000513620 788 ntBASIC7.43□□□□□ -1.22
MSX1P28360 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC7.43□□□□□ -1.22
MSX1P28360 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC7.43□□□□□ -1.22
MSX1P28360 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC7.43□□□□□ -1.22
MSX1P28360 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC7.43□□□□□ -1.22
MSX1P28360 AP000619.1-201ENST00000540293 1000 ntBASIC7.43□□□□□ -1.22
MSX1P28360 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC7.43□□□□□ -1.22
MSX1P28360 AC233290.2-201ENST00000552852 390 ntBASIC7.43□□□□□ -1.22
MSX1P28360 AC005230.1-201ENST00000555418 285 ntBASIC7.43□□□□□ -1.22
MSX1P28360 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC7.43□□□□□ -1.22
MSX1P28360 HNRNPC-226ENST00000556628 1156 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
MSX1P28360 AC090971.3-201ENST00000557871 1041 ntBASIC7.43□□□□□ -1.22
MSX1P28360 PCAT29-202ENST00000558941 545 ntTSL 4 BASIC7.43□□□□□ -1.22
MSX1P28360 LINC01582-201ENST00000560195 560 ntTSL 4 BASIC7.43□□□□□ -1.22
MSX1P28360 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC7.43□□□□□ -1.22
MSX1P28360 ZNF397-211ENST00000592264 1104 ntTSL 3 BASIC7.43□□□□□ -1.22
MSX1P28360 AC008635.1-201ENST00000600716 562 ntTSL 4 BASIC7.43□□□□□ -1.22
MSX1P28360 AL161729.3-201ENST00000603533 673 ntBASIC7.43□□□□□ -1.22
MSX1P28360 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
MSX1P28360 AP005137.2-201ENST00000609238 400 ntBASIC7.43□□□□□ -1.22
MSX1P28360 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms