Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.65■□□□□ 0.74
VPS9D1Q9Y2B5 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.64■□□□□ 0.74
VPS9D1Q9Y2B5 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
VPS9D1Q9Y2B5 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
VPS9D1Q9Y2B5 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.64■□□□□ 0.74
VPS9D1Q9Y2B5 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS9D1Q9Y2B5 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS9D1Q9Y2B5 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
VPS9D1Q9Y2B5 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS9D1Q9Y2B5 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS9D1Q9Y2B5 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS9D1Q9Y2B5 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC19.64■□□□□ 0.73
VPS9D1Q9Y2B5 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.64■□□□□ 0.73
VPS9D1Q9Y2B5 AC133041.1-202ENST00000642053 222 ntBASIC19.64■□□□□ 0.73
VPS9D1Q9Y2B5 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VPS9D1Q9Y2B5 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
VPS9D1Q9Y2B5 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS9D1Q9Y2B5 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS9D1Q9Y2B5 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.64■□□□□ 0.73
VPS9D1Q9Y2B5 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS9D1Q9Y2B5 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS9D1Q9Y2B5 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.73
VPS9D1Q9Y2B5 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS9D1Q9Y2B5 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS9D1Q9Y2B5 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS9D1Q9Y2B5 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS9D1Q9Y2B5 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS9D1Q9Y2B5 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VPS9D1Q9Y2B5 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS9D1Q9Y2B5 AC125437.2-201ENST00000625180 2167 ntBASIC19.63■□□□□ 0.73
VPS9D1Q9Y2B5 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VPS9D1Q9Y2B5 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS9D1Q9Y2B5 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VPS9D1Q9Y2B5 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS9D1Q9Y2B5 AC116351.2-201ENST00000606540 1585 ntBASIC19.63■□□□□ 0.73
VPS9D1Q9Y2B5 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VPS9D1Q9Y2B5 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS9D1Q9Y2B5 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS9D1Q9Y2B5 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
VPS9D1Q9Y2B5 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC19.63■□□□□ 0.73
VPS9D1Q9Y2B5 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS9D1Q9Y2B5 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS9D1Q9Y2B5 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.63■□□□□ 0.73
VPS9D1Q9Y2B5 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.63■□□□□ 0.73
VPS9D1Q9Y2B5 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS9D1Q9Y2B5 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS9D1Q9Y2B5 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS9D1Q9Y2B5 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS9D1Q9Y2B5 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS9D1Q9Y2B5 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
VPS9D1Q9Y2B5 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.62■□□□□ 0.73
VPS9D1Q9Y2B5 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS9D1Q9Y2B5 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS9D1Q9Y2B5 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
VPS9D1Q9Y2B5 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.62■□□□□ 0.73
VPS9D1Q9Y2B5 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
VPS9D1Q9Y2B5 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS9D1Q9Y2B5 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS9D1Q9Y2B5 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS9D1Q9Y2B5 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS9D1Q9Y2B5 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS9D1Q9Y2B5 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC19.62■□□□□ 0.73
VPS9D1Q9Y2B5 GATS-209ENST00000454084 1030 ntTSL 3 BASIC19.62■□□□□ 0.73
VPS9D1Q9Y2B5 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS9D1Q9Y2B5 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS9D1Q9Y2B5 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC19.62■□□□□ 0.73
VPS9D1Q9Y2B5 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC19.62■□□□□ 0.73
VPS9D1Q9Y2B5 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS9D1Q9Y2B5 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS9D1Q9Y2B5 AC092368.3-202ENST00000574180 1591 ntBASIC19.61■□□□□ 0.73
VPS9D1Q9Y2B5 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS9D1Q9Y2B5 AC018553.1-201ENST00000616682 1458 ntBASIC19.61■□□□□ 0.73
VPS9D1Q9Y2B5 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
VPS9D1Q9Y2B5 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
VPS9D1Q9Y2B5 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS9D1Q9Y2B5 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC19.61■□□□□ 0.73
VPS9D1Q9Y2B5 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
VPS9D1Q9Y2B5 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC19.61■□□□□ 0.73
VPS9D1Q9Y2B5 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS9D1Q9Y2B5 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC19.61■□□□□ 0.73
VPS9D1Q9Y2B5 AC060766.5-201ENST00000590539 871 ntBASIC19.61■□□□□ 0.73
VPS9D1Q9Y2B5 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS9D1Q9Y2B5 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS9D1Q9Y2B5 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.61■□□□□ 0.73
VPS9D1Q9Y2B5 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.61■□□□□ 0.73
VPS9D1Q9Y2B5 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.61■□□□□ 0.73
VPS9D1Q9Y2B5 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.61■□□□□ 0.73
VPS9D1Q9Y2B5 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.61■□□□□ 0.73
VPS9D1Q9Y2B5 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.61■□□□□ 0.73
VPS9D1Q9Y2B5 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.61■□□□□ 0.73
VPS9D1Q9Y2B5 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.6■□□□□ 0.73
VPS9D1Q9Y2B5 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
VPS9D1Q9Y2B5 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.6■□□□□ 0.73
VPS9D1Q9Y2B5 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.6■□□□□ 0.73
VPS9D1Q9Y2B5 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS9D1Q9Y2B5 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS9D1Q9Y2B5 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.6■□□□□ 0.73
VPS9D1Q9Y2B5 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS9D1Q9Y2B5 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS9D1Q9Y2B5 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms