Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA2Q9Y261 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA2Q9Y261 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA2Q9Y261 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA2Q9Y261 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC15.97■□□□□ 0.15
FOXA2Q9Y261 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC15.96■□□□□ 0.15
FOXA2Q9Y261 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA2Q9Y261 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA2Q9Y261 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA2Q9Y261 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA2Q9Y261 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA2Q9Y261 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA2Q9Y261 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA2Q9Y261 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA2Q9Y261 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA2Q9Y261 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA2Q9Y261 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA2Q9Y261 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA2Q9Y261 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA2Q9Y261 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC15.96■□□□□ 0.15
FOXA2Q9Y261 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC15.96■□□□□ 0.15
FOXA2Q9Y261 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC15.96■□□□□ 0.15
FOXA2Q9Y261 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA2Q9Y261 STK25-204ENST00000405585 1643 ntTSL 2 BASIC15.96■□□□□ 0.15
FOXA2Q9Y261 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
FOXA2Q9Y261 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC15.96■□□□□ 0.15
FOXA2Q9Y261 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA2Q9Y261 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA2Q9Y261 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA2Q9Y261 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.14
FOXA2Q9Y261 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC15.96■□□□□ 0.14
FOXA2Q9Y261 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC15.96■□□□□ 0.14
FOXA2Q9Y261 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC15.96■□□□□ 0.14
FOXA2Q9Y261 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA2Q9Y261 KRT8P20-201ENST00000423953 1409 ntBASIC15.95■□□□□ 0.14
FOXA2Q9Y261 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC15.95■□□□□ 0.14
FOXA2Q9Y261 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA2Q9Y261 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC15.95■□□□□ 0.14
FOXA2Q9Y261 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC15.95■□□□□ 0.14
FOXA2Q9Y261 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC15.95■□□□□ 0.14
FOXA2Q9Y261 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA2Q9Y261 AC093484.2-201ENST00000580996 2166 ntBASIC15.95■□□□□ 0.14
FOXA2Q9Y261 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA2Q9Y261 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
FOXA2Q9Y261 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC15.95■□□□□ 0.14
FOXA2Q9Y261 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC15.95■□□□□ 0.14
FOXA2Q9Y261 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC15.95■□□□□ 0.14
FOXA2Q9Y261 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC15.95■□□□□ 0.14
FOXA2Q9Y261 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA2Q9Y261 AC092118.2-201ENST00000613495 667 ntBASIC15.95■□□□□ 0.14
FOXA2Q9Y261 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC15.95■□□□□ 0.14
FOXA2Q9Y261 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA2Q9Y261 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA2Q9Y261 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA2Q9Y261 AP001271.2-201ENST00000624018 1556 ntBASIC15.95■□□□□ 0.14
FOXA2Q9Y261 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA2Q9Y261 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA2Q9Y261 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA2Q9Y261 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA2Q9Y261 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
FOXA2Q9Y261 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
FOXA2Q9Y261 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC15.94■□□□□ 0.14
FOXA2Q9Y261 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
FOXA2Q9Y261 KRT17P1-201ENST00000399211 1546 ntBASIC15.94■□□□□ 0.14
FOXA2Q9Y261 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC15.94■□□□□ 0.14
FOXA2Q9Y261 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
FOXA2Q9Y261 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC15.94■□□□□ 0.14
FOXA2Q9Y261 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC15.94■□□□□ 0.14
FOXA2Q9Y261 AL355802.2-201ENST00000402069 882 ntBASIC15.94■□□□□ 0.14
FOXA2Q9Y261 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC15.94■□□□□ 0.14
FOXA2Q9Y261 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC15.94■□□□□ 0.14
FOXA2Q9Y261 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC15.94■□□□□ 0.14
FOXA2Q9Y261 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC15.94■□□□□ 0.14
FOXA2Q9Y261 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC15.94■□□□□ 0.14
FOXA2Q9Y261 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
FOXA2Q9Y261 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC15.94■□□□□ 0.14
FOXA2Q9Y261 AC087289.5-201ENST00000586076 3175 ntBASIC15.94■□□□□ 0.14
FOXA2Q9Y261 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
FOXA2Q9Y261 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
FOXA2Q9Y261 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
FOXA2Q9Y261 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC15.94■□□□□ 0.14
FOXA2Q9Y261 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
FOXA2Q9Y261 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
FOXA2Q9Y261 PWWP2AP1-201ENST00000429776 2273 ntBASIC15.93■□□□□ 0.14
FOXA2Q9Y261 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
FOXA2Q9Y261 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
FOXA2Q9Y261 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC15.93■□□□□ 0.14
FOXA2Q9Y261 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
FOXA2Q9Y261 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC15.93■□□□□ 0.14
FOXA2Q9Y261 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
FOXA2Q9Y261 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
FOXA2Q9Y261 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
FOXA2Q9Y261 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC15.93■□□□□ 0.14
FOXA2Q9Y261 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
FOXA2Q9Y261 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
FOXA2Q9Y261 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
FOXA2Q9Y261 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
FOXA2Q9Y261 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC15.93■□□□□ 0.14
FOXA2Q9Y261 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC15.93■□□□□ 0.14
FOXA2Q9Y261 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC15.93■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms