Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19.07■□□□□ 0.64
VPS4AQ9UN37 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VPS4AQ9UN37 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS4AQ9UN37 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.07■□□□□ 0.64
VPS4AQ9UN37 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS4AQ9UN37 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS4AQ9UN37 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.07■□□□□ 0.64
VPS4AQ9UN37 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS4AQ9UN37 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS4AQ9UN37 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS4AQ9UN37 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VPS4AQ9UN37 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.06■□□□□ 0.64
VPS4AQ9UN37 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.06■□□□□ 0.64
VPS4AQ9UN37 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.06■□□□□ 0.64
VPS4AQ9UN37 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VPS4AQ9UN37 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS4AQ9UN37 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS4AQ9UN37 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
VPS4AQ9UN37 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS4AQ9UN37 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS4AQ9UN37 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
VPS4AQ9UN37 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.06■□□□□ 0.64
VPS4AQ9UN37 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC19.06■□□□□ 0.64
VPS4AQ9UN37 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC19.06■□□□□ 0.64
VPS4AQ9UN37 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.06■□□□□ 0.64
VPS4AQ9UN37 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.06■□□□□ 0.64
VPS4AQ9UN37 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC19.06■□□□□ 0.64
VPS4AQ9UN37 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC19.06■□□□□ 0.64
VPS4AQ9UN37 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS4AQ9UN37 AL359736.2-201ENST00000621992 437 ntBASIC19.06■□□□□ 0.64
VPS4AQ9UN37 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
VPS4AQ9UN37 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS4AQ9UN37 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
VPS4AQ9UN37 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS4AQ9UN37 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS4AQ9UN37 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.06■□□□□ 0.64
VPS4AQ9UN37 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VPS4AQ9UN37 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VPS4AQ9UN37 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS4AQ9UN37 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS4AQ9UN37 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VPS4AQ9UN37 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.06■□□□□ 0.64
VPS4AQ9UN37 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4AQ9UN37 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.05■□□□□ 0.64
VPS4AQ9UN37 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.05■□□□□ 0.64
VPS4AQ9UN37 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4AQ9UN37 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4AQ9UN37 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4AQ9UN37 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4AQ9UN37 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
VPS4AQ9UN37 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4AQ9UN37 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC19.05■□□□□ 0.64
VPS4AQ9UN37 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4AQ9UN37 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4AQ9UN37 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4AQ9UN37 MIR4497-201ENST00000583208 89 ntBASIC19.05■□□□□ 0.64
VPS4AQ9UN37 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.05■□□□□ 0.64
VPS4AQ9UN37 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.05■□□□□ 0.64
VPS4AQ9UN37 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4AQ9UN37 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4AQ9UN37 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4AQ9UN37 AIRN-201ENST00000601203 4374 ntBASIC19.05■□□□□ 0.64
VPS4AQ9UN37 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4AQ9UN37 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.05■□□□□ 0.64
VPS4AQ9UN37 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4AQ9UN37 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.05■□□□□ 0.64
VPS4AQ9UN37 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC19.05■□□□□ 0.64
VPS4AQ9UN37 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4AQ9UN37 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4AQ9UN37 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4AQ9UN37 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
VPS4AQ9UN37 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS4AQ9UN37 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS4AQ9UN37 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS4AQ9UN37 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS4AQ9UN37 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS4AQ9UN37 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS4AQ9UN37 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS4AQ9UN37 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
VPS4AQ9UN37 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
VPS4AQ9UN37 FAM210CP-201ENST00000445714 574 ntBASIC19.04■□□□□ 0.64
VPS4AQ9UN37 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
VPS4AQ9UN37 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VPS4AQ9UN37 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC19.04■□□□□ 0.64
VPS4AQ9UN37 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC19.04■□□□□ 0.64
VPS4AQ9UN37 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC19.04■□□□□ 0.64
VPS4AQ9UN37 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
VPS4AQ9UN37 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS4AQ9UN37 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS4AQ9UN37 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS4AQ9UN37 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS4AQ9UN37 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VPS4AQ9UN37 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS4AQ9UN37 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS4AQ9UN37 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS4AQ9UN37 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS4AQ9UN37 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS4AQ9UN37 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS4AQ9UN37 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS4AQ9UN37 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms