Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLCF1Q9UBD9 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLCF1Q9UBD9 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLCF1Q9UBD9 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC17.59■□□□□ 0.41
CLCF1Q9UBD9 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC17.59■□□□□ 0.41
CLCF1Q9UBD9 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC17.59■□□□□ 0.41
CLCF1Q9UBD9 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC17.59■□□□□ 0.41
CLCF1Q9UBD9 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
CLCF1Q9UBD9 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC17.59■□□□□ 0.41
CLCF1Q9UBD9 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
CLCF1Q9UBD9 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLCF1Q9UBD9 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLCF1Q9UBD9 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CLCF1Q9UBD9 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLCF1Q9UBD9 YBX1P10-201ENST00000444752 975 ntBASIC17.59■□□□□ 0.41
CLCF1Q9UBD9 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
CLCF1Q9UBD9 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLCF1Q9UBD9 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC17.59■□□□□ 0.41
CLCF1Q9UBD9 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CLCF1Q9UBD9 DET1-207ENST00000564406 2315 ntTSL 2 BASIC17.59■□□□□ 0.41
CLCF1Q9UBD9 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLCF1Q9UBD9 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLCF1Q9UBD9 AP005212.1-201ENST00000581547 1997 ntBASIC17.59■□□□□ 0.41
CLCF1Q9UBD9 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CLCF1Q9UBD9 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CLCF1Q9UBD9 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CLCF1Q9UBD9 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CLCF1Q9UBD9 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC17.58■□□□□ 0.41
CLCF1Q9UBD9 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC17.58■□□□□ 0.41
CLCF1Q9UBD9 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC17.58■□□□□ 0.4
CLCF1Q9UBD9 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC17.58■□□□□ 0.4
CLCF1Q9UBD9 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
CLCF1Q9UBD9 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
CLCF1Q9UBD9 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC17.58■□□□□ 0.4
CLCF1Q9UBD9 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CLCF1Q9UBD9 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.58■□□□□ 0.4
CLCF1Q9UBD9 AC073195.1-201ENST00000607241 877 ntBASIC17.58■□□□□ 0.4
CLCF1Q9UBD9 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
CLCF1Q9UBD9 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
CLCF1Q9UBD9 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC17.58■□□□□ 0.4
CLCF1Q9UBD9 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CLCF1Q9UBD9 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLCF1Q9UBD9 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLCF1Q9UBD9 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC17.58■□□□□ 0.4
CLCF1Q9UBD9 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
CLCF1Q9UBD9 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLCF1Q9UBD9 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
CLCF1Q9UBD9 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLCF1Q9UBD9 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
CLCF1Q9UBD9 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLCF1Q9UBD9 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLCF1Q9UBD9 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CLCF1Q9UBD9 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CLCF1Q9UBD9 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CLCF1Q9UBD9 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC17.57■□□□□ 0.4
CLCF1Q9UBD9 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CLCF1Q9UBD9 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC17.57■□□□□ 0.4
CLCF1Q9UBD9 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC17.57■□□□□ 0.4
CLCF1Q9UBD9 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CLCF1Q9UBD9 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CLCF1Q9UBD9 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.57■□□□□ 0.4
CLCF1Q9UBD9 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CLCF1Q9UBD9 AP002982.1-201ENST00000492365 877 ntBASIC17.57■□□□□ 0.4
CLCF1Q9UBD9 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC17.57■□□□□ 0.4
CLCF1Q9UBD9 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
CLCF1Q9UBD9 CD177P1-201ENST00000606252 935 ntBASIC17.57■□□□□ 0.4
CLCF1Q9UBD9 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC17.57■□□□□ 0.4
CLCF1Q9UBD9 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLCF1Q9UBD9 CD37-204ENST00000535669 1674 ntTSL 2 BASIC17.57■□□□□ 0.4
CLCF1Q9UBD9 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CLCF1Q9UBD9 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLCF1Q9UBD9 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CLCF1Q9UBD9 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLCF1Q9UBD9 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLCF1Q9UBD9 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLCF1Q9UBD9 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLCF1Q9UBD9 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLCF1Q9UBD9 SRI-203ENST00000419179 1307 ntTSL 2 BASIC17.56■□□□□ 0.4
CLCF1Q9UBD9 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CLCF1Q9UBD9 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLCF1Q9UBD9 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC17.56■□□□□ 0.4
CLCF1Q9UBD9 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC17.56■□□□□ 0.4
CLCF1Q9UBD9 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC17.56■□□□□ 0.4
CLCF1Q9UBD9 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLCF1Q9UBD9 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC17.56■□□□□ 0.4
CLCF1Q9UBD9 C1QL1P1-201ENST00000568105 661 ntBASIC17.56■□□□□ 0.4
CLCF1Q9UBD9 AC026471.5-201ENST00000615068 467 ntBASIC17.56■□□□□ 0.4
CLCF1Q9UBD9 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
CLCF1Q9UBD9 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
CLCF1Q9UBD9 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLCF1Q9UBD9 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC17.56■□□□□ 0.4
CLCF1Q9UBD9 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
CLCF1Q9UBD9 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLCF1Q9UBD9 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLCF1Q9UBD9 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CLCF1Q9UBD9 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLCF1Q9UBD9 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC17.55■□□□□ 0.4
CLCF1Q9UBD9 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLCF1Q9UBD9 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CLCF1Q9UBD9 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms