Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 MIR663A-201ENST00000385250 93 ntBASIC17.63■□□□□ 0.41
VSX1Q9NZR4 GPX1P1-201ENST00000388829 606 ntBASIC17.63■□□□□ 0.41
VSX1Q9NZR4 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC17.63■□□□□ 0.41
VSX1Q9NZR4 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC17.63■□□□□ 0.41
VSX1Q9NZR4 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC17.63■□□□□ 0.41
VSX1Q9NZR4 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
VSX1Q9NZR4 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
VSX1Q9NZR4 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
VSX1Q9NZR4 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 MOK-233ENST00000524214 1539 ntTSL 2 BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 SERP1-205ENST00000487153 657 ntTSL 4 BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 DLX3-202ENST00000512495 834 ntTSL 2 BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 PHB2-213ENST00000546111 858 ntTSL 2 BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 OAS3-207ENST00000551007 998 ntTSL 2 BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VSX1Q9NZR4 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
VSX1Q9NZR4 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VSX1Q9NZR4 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VSX1Q9NZR4 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC17.61■□□□□ 0.41
VSX1Q9NZR4 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
VSX1Q9NZR4 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
VSX1Q9NZR4 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VSX1Q9NZR4 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VSX1Q9NZR4 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
VSX1Q9NZR4 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VSX1Q9NZR4 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VSX1Q9NZR4 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VSX1Q9NZR4 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
VSX1Q9NZR4 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC17.61■□□□□ 0.41
VSX1Q9NZR4 BX276092.2-201ENST00000417668 665 ntBASIC17.61■□□□□ 0.41
VSX1Q9NZR4 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC17.61■□□□□ 0.41
VSX1Q9NZR4 CROCCP5-201ENST00000436658 830 ntBASIC17.61■□□□□ 0.41
VSX1Q9NZR4 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VSX1Q9NZR4 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
VSX1Q9NZR4 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC17.61■□□□□ 0.41
VSX1Q9NZR4 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VSX1Q9NZR4 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VSX1Q9NZR4 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VSX1Q9NZR4 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VSX1Q9NZR4 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VSX1Q9NZR4 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
VSX1Q9NZR4 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.6■□□□□ 0.41
VSX1Q9NZR4 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VSX1Q9NZR4 PWWP2AP1-201ENST00000429776 2273 ntBASIC17.6■□□□□ 0.41
VSX1Q9NZR4 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VSX1Q9NZR4 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VSX1Q9NZR4 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC17.6■□□□□ 0.41
VSX1Q9NZR4 METTL15-202ENST00000403099 795 ntTSL 5 BASIC17.6■□□□□ 0.41
VSX1Q9NZR4 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC17.6■□□□□ 0.41
VSX1Q9NZR4 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VSX1Q9NZR4 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VSX1Q9NZR4 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VSX1Q9NZR4 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC17.6■□□□□ 0.41
VSX1Q9NZR4 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VSX1Q9NZR4 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC17.6■□□□□ 0.41
VSX1Q9NZR4 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VSX1Q9NZR4 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC17.6■□□□□ 0.41
VSX1Q9NZR4 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
VSX1Q9NZR4 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
VSX1Q9NZR4 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VSX1Q9NZR4 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VSX1Q9NZR4 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
VSX1Q9NZR4 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VSX1Q9NZR4 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VSX1Q9NZR4 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VSX1Q9NZR4 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC17.59■□□□□ 0.41
VSX1Q9NZR4 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
VSX1Q9NZR4 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VSX1Q9NZR4 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VSX1Q9NZR4 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VSX1Q9NZR4 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC17.59■□□□□ 0.41
VSX1Q9NZR4 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC17.59■□□□□ 0.41
VSX1Q9NZR4 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC17.59■□□□□ 0.41
VSX1Q9NZR4 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC17.59■□□□□ 0.41
VSX1Q9NZR4 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms