Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SIX2Q9NPC8 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SIX2Q9NPC8 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
SIX2Q9NPC8 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SIX2Q9NPC8 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SIX2Q9NPC8 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SIX2Q9NPC8 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC21.23■□□□□ 0.99
SIX2Q9NPC8 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SIX2Q9NPC8 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC21.22■□□□□ 0.99
SIX2Q9NPC8 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SIX2Q9NPC8 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
SIX2Q9NPC8 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SIX2Q9NPC8 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SIX2Q9NPC8 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SIX2Q9NPC8 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SIX2Q9NPC8 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SIX2Q9NPC8 AL390719.1-204ENST00000412397 1219 ntBASIC21.22■□□□□ 0.99
SIX2Q9NPC8 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC21.22■□□□□ 0.99
SIX2Q9NPC8 AC097658.1-201ENST00000475555 843 ntBASIC21.22■□□□□ 0.99
SIX2Q9NPC8 AC090192.1-201ENST00000517740 490 ntBASIC21.22■□□□□ 0.99
SIX2Q9NPC8 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC21.22■□□□□ 0.99
SIX2Q9NPC8 AL109923.1-201ENST00000618799 583 ntBASIC21.22■□□□□ 0.99
SIX2Q9NPC8 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SIX2Q9NPC8 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC21.22■□□□□ 0.99
SIX2Q9NPC8 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SIX2Q9NPC8 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SIX2Q9NPC8 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SIX2Q9NPC8 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC21.21■□□□□ 0.99
SIX2Q9NPC8 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC21.21■□□□□ 0.99
SIX2Q9NPC8 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC21.21■□□□□ 0.99
SIX2Q9NPC8 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SIX2Q9NPC8 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SIX2Q9NPC8 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC21.21■□□□□ 0.99
SIX2Q9NPC8 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC21.21■□□□□ 0.99
SIX2Q9NPC8 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SIX2Q9NPC8 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC21.21■□□□□ 0.99
SIX2Q9NPC8 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
SIX2Q9NPC8 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC21.21■□□□□ 0.99
SIX2Q9NPC8 AC104771.1-201ENST00000603335 964 ntBASIC21.21■□□□□ 0.99
SIX2Q9NPC8 HLA-B-256ENST00000639848 1089 ntBASIC21.21■□□□□ 0.99
SIX2Q9NPC8 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
SIX2Q9NPC8 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SIX2Q9NPC8 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SIX2Q9NPC8 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SIX2Q9NPC8 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
SIX2Q9NPC8 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
SIX2Q9NPC8 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SIX2Q9NPC8 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
SIX2Q9NPC8 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SIX2Q9NPC8 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SIX2Q9NPC8 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SIX2Q9NPC8 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SIX2Q9NPC8 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SIX2Q9NPC8 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SIX2Q9NPC8 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SIX2Q9NPC8 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SIX2Q9NPC8 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC21.2■□□□□ 0.98
SIX2Q9NPC8 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
SIX2Q9NPC8 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
SIX2Q9NPC8 AC142086.2-201ENST00000569753 217 ntBASIC21.2■□□□□ 0.98
SIX2Q9NPC8 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC21.2■□□□□ 0.98
SIX2Q9NPC8 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC21.2■□□□□ 0.98
SIX2Q9NPC8 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
SIX2Q9NPC8 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SIX2Q9NPC8 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SIX2Q9NPC8 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SIX2Q9NPC8 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SIX2Q9NPC8 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SIX2Q9NPC8 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
SIX2Q9NPC8 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC21.2■□□□□ 0.98
SIX2Q9NPC8 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC21.2■□□□□ 0.98
SIX2Q9NPC8 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SIX2Q9NPC8 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SIX2Q9NPC8 AC092368.3-202ENST00000574180 1591 ntBASIC21.19■□□□□ 0.98
SIX2Q9NPC8 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SIX2Q9NPC8 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC21.19■□□□□ 0.98
SIX2Q9NPC8 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SIX2Q9NPC8 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC21.19■□□□□ 0.98
SIX2Q9NPC8 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC21.19■□□□□ 0.98
SIX2Q9NPC8 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC21.19■□□□□ 0.98
SIX2Q9NPC8 RPS2P52-201ENST00000469610 820 ntBASIC21.19■□□□□ 0.98
SIX2Q9NPC8 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC21.19■□□□□ 0.98
SIX2Q9NPC8 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SIX2Q9NPC8 KLF2-202ENST00000592003 564 ntTSL 3 BASIC21.19■□□□□ 0.98
SIX2Q9NPC8 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
SIX2Q9NPC8 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC21.19■□□□□ 0.98
SIX2Q9NPC8 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.19■□□□□ 0.98
SIX2Q9NPC8 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
SIX2Q9NPC8 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC21.19■□□□□ 0.98
SIX2Q9NPC8 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC21.19■□□□□ 0.98
SIX2Q9NPC8 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SIX2Q9NPC8 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SIX2Q9NPC8 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SIX2Q9NPC8 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC21.19■□□□□ 0.98
SIX2Q9NPC8 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SIX2Q9NPC8 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC21.18■□□□□ 0.98
SIX2Q9NPC8 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SIX2Q9NPC8 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SIX2Q9NPC8 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SIX2Q9NPC8 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms