Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TM9SF3Q9HD45 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TM9SF3Q9HD45 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
TM9SF3Q9HD45 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.77■□□□□ 0.76
TM9SF3Q9HD45 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
TM9SF3Q9HD45 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC19.77■□□□□ 0.76
TM9SF3Q9HD45 AP002982.1-201ENST00000492365 877 ntBASIC19.77■□□□□ 0.76
TM9SF3Q9HD45 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC19.77■□□□□ 0.76
TM9SF3Q9HD45 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC19.77■□□□□ 0.76
TM9SF3Q9HD45 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC19.77■□□□□ 0.76
TM9SF3Q9HD45 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC19.77■□□□□ 0.76
TM9SF3Q9HD45 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
TM9SF3Q9HD45 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
TM9SF3Q9HD45 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
TM9SF3Q9HD45 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
TM9SF3Q9HD45 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
TM9SF3Q9HD45 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC19.76■□□□□ 0.75
TM9SF3Q9HD45 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
TM9SF3Q9HD45 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TM9SF3Q9HD45 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TM9SF3Q9HD45 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TM9SF3Q9HD45 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
TM9SF3Q9HD45 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
TM9SF3Q9HD45 LINC01006-201ENST00000333319 2292 ntBASIC19.76■□□□□ 0.75
TM9SF3Q9HD45 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.76■□□□□ 0.75
TM9SF3Q9HD45 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
TM9SF3Q9HD45 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
TM9SF3Q9HD45 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TM9SF3Q9HD45 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TM9SF3Q9HD45 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TM9SF3Q9HD45 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
TM9SF3Q9HD45 NUDT16P1-203ENST00000513809 620 ntBASIC19.76■□□□□ 0.75
TM9SF3Q9HD45 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC19.76■□□□□ 0.75
TM9SF3Q9HD45 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TM9SF3Q9HD45 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TM9SF3Q9HD45 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC19.76■□□□□ 0.75
TM9SF3Q9HD45 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.76■□□□□ 0.75
TM9SF3Q9HD45 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
TM9SF3Q9HD45 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.76■□□□□ 0.75
TM9SF3Q9HD45 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC19.76■□□□□ 0.75
TM9SF3Q9HD45 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
TM9SF3Q9HD45 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TM9SF3Q9HD45 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC19.76■□□□□ 0.75
TM9SF3Q9HD45 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TM9SF3Q9HD45 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TM9SF3Q9HD45 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TM9SF3Q9HD45 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
TM9SF3Q9HD45 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC19.75■□□□□ 0.75
TM9SF3Q9HD45 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
TM9SF3Q9HD45 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
TM9SF3Q9HD45 RBM17P1-201ENST00000453646 1190 ntBASIC19.75■□□□□ 0.75
TM9SF3Q9HD45 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TM9SF3Q9HD45 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC19.75■□□□□ 0.75
TM9SF3Q9HD45 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.75■□□□□ 0.75
TM9SF3Q9HD45 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.75■□□□□ 0.75
TM9SF3Q9HD45 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TM9SF3Q9HD45 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.75■□□□□ 0.75
TM9SF3Q9HD45 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.75■□□□□ 0.75
TM9SF3Q9HD45 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
TM9SF3Q9HD45 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
TM9SF3Q9HD45 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.75■□□□□ 0.75
TM9SF3Q9HD45 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.75■□□□□ 0.75
TM9SF3Q9HD45 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.74■□□□□ 0.75
TM9SF3Q9HD45 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
TM9SF3Q9HD45 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
TM9SF3Q9HD45 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
TM9SF3Q9HD45 FEM1AP1-201ENST00000431297 1995 ntBASIC19.74■□□□□ 0.75
TM9SF3Q9HD45 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TM9SF3Q9HD45 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
TM9SF3Q9HD45 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TM9SF3Q9HD45 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC19.74■□□□□ 0.75
TM9SF3Q9HD45 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19.74■□□□□ 0.75
TM9SF3Q9HD45 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.74■□□□□ 0.75
TM9SF3Q9HD45 AL031963.3-201ENST00000606441 850 ntBASIC19.74■□□□□ 0.75
TM9SF3Q9HD45 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TM9SF3Q9HD45 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
TM9SF3Q9HD45 KRT8P20-201ENST00000423953 1409 ntBASIC19.74■□□□□ 0.75
TM9SF3Q9HD45 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.74■□□□□ 0.75
TM9SF3Q9HD45 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.74■□□□□ 0.75
TM9SF3Q9HD45 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.74■□□□□ 0.75
TM9SF3Q9HD45 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
TM9SF3Q9HD45 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.73■□□□□ 0.75
TM9SF3Q9HD45 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TM9SF3Q9HD45 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TM9SF3Q9HD45 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TM9SF3Q9HD45 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TM9SF3Q9HD45 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
TM9SF3Q9HD45 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TM9SF3Q9HD45 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TM9SF3Q9HD45 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
TM9SF3Q9HD45 TMPOP1-202ENST00000424642 1267 ntBASIC19.73■□□□□ 0.75
TM9SF3Q9HD45 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC19.73■□□□□ 0.75
TM9SF3Q9HD45 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.73■□□□□ 0.75
TM9SF3Q9HD45 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC19.73■□□□□ 0.75
TM9SF3Q9HD45 REXO1L10P-201ENST00000615707 1290 ntBASIC19.73■□□□□ 0.75
TM9SF3Q9HD45 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
TM9SF3Q9HD45 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
TM9SF3Q9HD45 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TM9SF3Q9HD45 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
TM9SF3Q9HD45 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms