Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PCDH9Q9HC56 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.39■□□□□ 0.85
PCDH9Q9HC56 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PCDH9Q9HC56 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
PCDH9Q9HC56 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PCDH9Q9HC56 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
PCDH9Q9HC56 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.39■□□□□ 0.85
PCDH9Q9HC56 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
PCDH9Q9HC56 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.39■□□□□ 0.85
PCDH9Q9HC56 AC091874.3-201ENST00000512672 1195 ntBASIC20.39■□□□□ 0.85
PCDH9Q9HC56 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC20.39■□□□□ 0.85
PCDH9Q9HC56 AC098934.4-201ENST00000564127 592 ntBASIC20.39■□□□□ 0.85
PCDH9Q9HC56 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.39■□□□□ 0.85
PCDH9Q9HC56 BRWD1-AS2-201ENST00000603064 1028 ntBASIC20.39■□□□□ 0.85
PCDH9Q9HC56 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PCDH9Q9HC56 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PCDH9Q9HC56 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PCDH9Q9HC56 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PCDH9Q9HC56 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
PCDH9Q9HC56 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PCDH9Q9HC56 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PCDH9Q9HC56 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.39■□□□□ 0.85
PCDH9Q9HC56 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.39■□□□□ 0.85
PCDH9Q9HC56 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PCDH9Q9HC56 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC20.38■□□□□ 0.85
PCDH9Q9HC56 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PCDH9Q9HC56 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PCDH9Q9HC56 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.38■□□□□ 0.85
PCDH9Q9HC56 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCDH9Q9HC56 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCDH9Q9HC56 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
PCDH9Q9HC56 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCDH9Q9HC56 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PCDH9Q9HC56 AC073210.2-201ENST00000430369 194 ntBASIC20.38■□□□□ 0.85
PCDH9Q9HC56 AC069152.1-201ENST00000438030 544 ntBASIC20.38■□□□□ 0.85
PCDH9Q9HC56 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.38■□□□□ 0.85
PCDH9Q9HC56 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PCDH9Q9HC56 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.38■□□□□ 0.85
PCDH9Q9HC56 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PCDH9Q9HC56 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.38■□□□□ 0.85
PCDH9Q9HC56 AC133041.1-202ENST00000642053 222 ntBASIC20.38■□□□□ 0.85
PCDH9Q9HC56 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCDH9Q9HC56 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.38■□□□□ 0.85
PCDH9Q9HC56 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PCDH9Q9HC56 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCDH9Q9HC56 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
PCDH9Q9HC56 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDH9Q9HC56 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDH9Q9HC56 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
PCDH9Q9HC56 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDH9Q9HC56 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDH9Q9HC56 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDH9Q9HC56 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC20.37■□□□□ 0.85
PCDH9Q9HC56 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDH9Q9HC56 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.37■□□□□ 0.85
PCDH9Q9HC56 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDH9Q9HC56 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
PCDH9Q9HC56 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDH9Q9HC56 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PCDH9Q9HC56 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.37■□□□□ 0.85
PCDH9Q9HC56 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDH9Q9HC56 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDH9Q9HC56 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDH9Q9HC56 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC20.37■□□□□ 0.85
PCDH9Q9HC56 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDH9Q9HC56 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDH9Q9HC56 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDH9Q9HC56 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDH9Q9HC56 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.37■□□□□ 0.85
PCDH9Q9HC56 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC20.37■□□□□ 0.85
PCDH9Q9HC56 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.36■□□□□ 0.85
PCDH9Q9HC56 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PCDH9Q9HC56 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDH9Q9HC56 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDH9Q9HC56 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PCDH9Q9HC56 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDH9Q9HC56 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDH9Q9HC56 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC20.36■□□□□ 0.85
PCDH9Q9HC56 AC098818.2-201ENST00000564925 2320 ntBASIC20.36■□□□□ 0.85
PCDH9Q9HC56 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDH9Q9HC56 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.36■□□□□ 0.85
PCDH9Q9HC56 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDH9Q9HC56 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDH9Q9HC56 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.36■□□□□ 0.85
PCDH9Q9HC56 RHEB-204ENST00000472642 900 ntTSL 3 BASIC20.36■□□□□ 0.85
PCDH9Q9HC56 AC097658.1-201ENST00000475555 843 ntBASIC20.36■□□□□ 0.85
PCDH9Q9HC56 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PCDH9Q9HC56 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDH9Q9HC56 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
PCDH9Q9HC56 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.36■□□□□ 0.85
PCDH9Q9HC56 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDH9Q9HC56 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.35■□□□□ 0.85
PCDH9Q9HC56 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDH9Q9HC56 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.35■□□□□ 0.85
PCDH9Q9HC56 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC20.35■□□□□ 0.85
PCDH9Q9HC56 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
PCDH9Q9HC56 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.35■□□□□ 0.85
PCDH9Q9HC56 HLA-G-202ENST00000376815 851 ntBASIC20.35■□□□□ 0.85
PCDH9Q9HC56 HLA-G-203ENST00000376818 1127 ntBASIC20.35■□□□□ 0.85
PCDH9Q9HC56 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms