Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 MIR6786-201ENST00000616843 113 ntBASIC17.36■□□□□ 0.37
LIME1Q9H400 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LIME1Q9H400 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC17.36■□□□□ 0.37
LIME1Q9H400 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.36■□□□□ 0.37
LIME1Q9H400 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIME1Q9H400 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC17.36■□□□□ 0.37
LIME1Q9H400 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
LIME1Q9H400 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC17.36■□□□□ 0.37
LIME1Q9H400 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIME1Q9H400 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
LIME1Q9H400 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LIME1Q9H400 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
LIME1Q9H400 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIME1Q9H400 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.36■□□□□ 0.37
LIME1Q9H400 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LIME1Q9H400 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC17.36■□□□□ 0.37
LIME1Q9H400 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIME1Q9H400 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIME1Q9H400 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIME1Q9H400 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC17.35■□□□□ 0.37
LIME1Q9H400 AC007225.1-201ENST00000566331 1836 ntBASIC17.35■□□□□ 0.37
LIME1Q9H400 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
LIME1Q9H400 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
LIME1Q9H400 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC17.35■□□□□ 0.37
LIME1Q9H400 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIME1Q9H400 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIME1Q9H400 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC17.35■□□□□ 0.37
LIME1Q9H400 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LIME1Q9H400 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC17.35■□□□□ 0.37
LIME1Q9H400 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC17.35■□□□□ 0.37
LIME1Q9H400 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC17.35■□□□□ 0.37
LIME1Q9H400 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC17.35■□□□□ 0.37
LIME1Q9H400 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC17.35■□□□□ 0.37
LIME1Q9H400 AF186192.3-201ENST00000583427 947 ntBASIC17.35■□□□□ 0.37
LIME1Q9H400 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LIME1Q9H400 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
LIME1Q9H400 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC17.35■□□□□ 0.37
LIME1Q9H400 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
LIME1Q9H400 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LIME1Q9H400 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC17.35■□□□□ 0.37
LIME1Q9H400 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIME1Q9H400 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIME1Q9H400 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LIME1Q9H400 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
LIME1Q9H400 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LIME1Q9H400 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIME1Q9H400 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC17.35■□□□□ 0.37
LIME1Q9H400 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIME1Q9H400 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LIME1Q9H400 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIME1Q9H400 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIME1Q9H400 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIME1Q9H400 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LIME1Q9H400 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIME1Q9H400 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC17.34■□□□□ 0.37
LIME1Q9H400 FAM197Y1-201ENST00000421178 764 ntBASIC17.34■□□□□ 0.37
LIME1Q9H400 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC17.34■□□□□ 0.37
LIME1Q9H400 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIME1Q9H400 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC17.34■□□□□ 0.37
LIME1Q9H400 HTR7P1-201ENST00000538670 1336 ntBASIC17.34■□□□□ 0.37
LIME1Q9H400 KRT8P9-201ENST00000558927 1449 ntBASIC17.34■□□□□ 0.37
LIME1Q9H400 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
LIME1Q9H400 AC112907.3-201ENST00000577781 2400 ntBASIC17.34■□□□□ 0.37
LIME1Q9H400 Six3os1_6.1-201ENST00000620790 196 ntBASIC17.34■□□□□ 0.37
LIME1Q9H400 AC020907.5-201ENST00000624372 1936 ntBASIC17.34■□□□□ 0.37
LIME1Q9H400 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
LIME1Q9H400 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LIME1Q9H400 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
LIME1Q9H400 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LIME1Q9H400 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LIME1Q9H400 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC17.33■□□□□ 0.37
LIME1Q9H400 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
LIME1Q9H400 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
LIME1Q9H400 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LIME1Q9H400 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
LIME1Q9H400 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIME1Q9H400 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIME1Q9H400 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC17.33■□□□□ 0.36
LIME1Q9H400 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC17.33■□□□□ 0.36
LIME1Q9H400 RPS15-203ENST00000586096 570 ntTSL 2 BASIC17.33■□□□□ 0.36
LIME1Q9H400 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC17.33■□□□□ 0.36
LIME1Q9H400 AL590326.2-201ENST00000625139 305 ntBASIC17.33■□□□□ 0.36
LIME1Q9H400 AC092865.7-201ENST00000641832 219 ntBASIC17.33■□□□□ 0.36
LIME1Q9H400 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
LIME1Q9H400 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIME1Q9H400 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC17.33■□□□□ 0.36
LIME1Q9H400 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIME1Q9H400 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIME1Q9H400 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIME1Q9H400 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
LIME1Q9H400 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIME1Q9H400 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIME1Q9H400 DET1-207ENST00000564406 2315 ntTSL 2 BASIC17.32■□□□□ 0.36
LIME1Q9H400 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC17.32■□□□□ 0.36
LIME1Q9H400 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIME1Q9H400 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
LIME1Q9H400 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIME1Q9H400 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIME1Q9H400 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIME1Q9H400 AC005521.1-201ENST00000393351 872 ntBASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms