Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 AL023803.3-201ENST00000615559 522 ntBASIC23.83■■□□□ 1.4
ZNF541Q9H0D2 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC23.83■■□□□ 1.4
ZNF541Q9H0D2 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
ZNF541Q9H0D2 GALC-202ENST00000393568 2054 ntTSL 2 BASIC23.82■■□□□ 1.4
ZNF541Q9H0D2 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC23.82■■□□□ 1.4
ZNF541Q9H0D2 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC23.82■■□□□ 1.4
ZNF541Q9H0D2 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC23.82■■□□□ 1.4
ZNF541Q9H0D2 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
ZNF541Q9H0D2 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
ZNF541Q9H0D2 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC23.82■■□□□ 1.4
ZNF541Q9H0D2 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
ZNF541Q9H0D2 PTK2-216ENST00000519881 863 ntTSL 3 BASIC23.82■■□□□ 1.4
ZNF541Q9H0D2 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC23.82■■□□□ 1.4
ZNF541Q9H0D2 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
ZNF541Q9H0D2 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
ZNF541Q9H0D2 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC23.81■■□□□ 1.4
ZNF541Q9H0D2 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
ZNF541Q9H0D2 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
ZNF541Q9H0D2 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC23.81■■□□□ 1.4
ZNF541Q9H0D2 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
ZNF541Q9H0D2 PTPA-216ENST00000432651 857 ntTSL 2 BASIC23.81■■□□□ 1.4
ZNF541Q9H0D2 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC23.81■■□□□ 1.4
ZNF541Q9H0D2 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC23.81■■□□□ 1.4
ZNF541Q9H0D2 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
ZNF541Q9H0D2 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC23.81■■□□□ 1.4
ZNF541Q9H0D2 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
ZNF541Q9H0D2 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
ZNF541Q9H0D2 AL121603.2-201ENST00000557373 2117 ntBASIC23.8■■□□□ 1.4
ZNF541Q9H0D2 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
ZNF541Q9H0D2 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
ZNF541Q9H0D2 GOLGA6L3-201ENST00000507199 1679 ntBASIC23.8■■□□□ 1.4
ZNF541Q9H0D2 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC23.8■■□□□ 1.4
ZNF541Q9H0D2 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
ZNF541Q9H0D2 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
ZNF541Q9H0D2 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC23.8■■□□□ 1.4
ZNF541Q9H0D2 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC23.8■■□□□ 1.4
ZNF541Q9H0D2 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC23.79■■□□□ 1.4
ZNF541Q9H0D2 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
ZNF541Q9H0D2 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
ZNF541Q9H0D2 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC23.79■■□□□ 1.4
ZNF541Q9H0D2 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC23.79■■□□□ 1.4
ZNF541Q9H0D2 AC018553.1-201ENST00000616682 1458 ntBASIC23.79■■□□□ 1.4
ZNF541Q9H0D2 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
ZNF541Q9H0D2 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
ZNF541Q9H0D2 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
ZNF541Q9H0D2 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
ZNF541Q9H0D2 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC23.79■■□□□ 1.4
ZNF541Q9H0D2 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC23.79■■□□□ 1.4
ZNF541Q9H0D2 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
ZNF541Q9H0D2 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
ZNF541Q9H0D2 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
ZNF541Q9H0D2 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC23.79■■□□□ 1.4
ZNF541Q9H0D2 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
ZNF541Q9H0D2 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
ZNF541Q9H0D2 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC23.78■■□□□ 1.4
ZNF541Q9H0D2 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC23.78■■□□□ 1.4
ZNF541Q9H0D2 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
ZNF541Q9H0D2 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
ZNF541Q9H0D2 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
ZNF541Q9H0D2 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
ZNF541Q9H0D2 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
ZNF541Q9H0D2 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC23.78■■□□□ 1.4
ZNF541Q9H0D2 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC23.78■■□□□ 1.4
ZNF541Q9H0D2 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
ZNF541Q9H0D2 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC23.78■■□□□ 1.4
ZNF541Q9H0D2 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC23.78■■□□□ 1.4
ZNF541Q9H0D2 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC23.78■■□□□ 1.4
ZNF541Q9H0D2 IRF5-214ENST00000613821 595 ntTSL 5 BASIC23.78■■□□□ 1.4
ZNF541Q9H0D2 AC008622.2-201ENST00000617006 1229 ntBASIC23.78■■□□□ 1.4
ZNF541Q9H0D2 AL691432.3-201ENST00000621860 400 ntBASIC23.78■■□□□ 1.4
ZNF541Q9H0D2 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
ZNF541Q9H0D2 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
ZNF541Q9H0D2 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
ZNF541Q9H0D2 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
ZNF541Q9H0D2 GUSBP5-202ENST00000510805 1989 ntBASIC23.77■■□□□ 1.4
ZNF541Q9H0D2 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
ZNF541Q9H0D2 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
ZNF541Q9H0D2 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
ZNF541Q9H0D2 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
ZNF541Q9H0D2 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
ZNF541Q9H0D2 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
ZNF541Q9H0D2 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
ZNF541Q9H0D2 AC121338.2-201ENST00000622535 1744 ntBASIC23.77■■□□□ 1.4
ZNF541Q9H0D2 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
ZNF541Q9H0D2 GXYLT1P6-201ENST00000456472 1187 ntBASIC23.77■■□□□ 1.4
ZNF541Q9H0D2 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC23.77■■□□□ 1.4
ZNF541Q9H0D2 ETFA-216ENST00000560726 942 ntTSL 3 BASIC23.77■■□□□ 1.4
ZNF541Q9H0D2 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC23.77■■□□□ 1.4
ZNF541Q9H0D2 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC23.77■■□□□ 1.4
ZNF541Q9H0D2 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC23.77■■□□□ 1.4
ZNF541Q9H0D2 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
ZNF541Q9H0D2 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC23.77■■□□□ 1.39
ZNF541Q9H0D2 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
ZNF541Q9H0D2 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC23.76■■□□□ 1.39
ZNF541Q9H0D2 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
ZNF541Q9H0D2 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC23.76■■□□□ 1.39
ZNF541Q9H0D2 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
ZNF541Q9H0D2 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
ZNF541Q9H0D2 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
ZNF541Q9H0D2 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC23.76■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms