Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM54Q9BYV2 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC19.48■□□□□ 0.71
TRIM54Q9BYV2 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC19.48■□□□□ 0.71
TRIM54Q9BYV2 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
TRIM54Q9BYV2 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC19.48■□□□□ 0.71
TRIM54Q9BYV2 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
TRIM54Q9BYV2 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM54Q9BYV2 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM54Q9BYV2 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM54Q9BYV2 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM54Q9BYV2 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM54Q9BYV2 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.47■□□□□ 0.71
TRIM54Q9BYV2 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM54Q9BYV2 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM54Q9BYV2 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM54Q9BYV2 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM54Q9BYV2 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
TRIM54Q9BYV2 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
TRIM54Q9BYV2 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM54Q9BYV2 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM54Q9BYV2 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM54Q9BYV2 AL390719.1-204ENST00000412397 1219 ntBASIC19.47■□□□□ 0.71
TRIM54Q9BYV2 DUSP5P2-201ENST00000426873 1033 ntBASIC19.47■□□□□ 0.71
TRIM54Q9BYV2 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
TRIM54Q9BYV2 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.47■□□□□ 0.71
TRIM54Q9BYV2 NME6-213ENST00000451657 871 ntTSL 2 BASIC19.47■□□□□ 0.71
TRIM54Q9BYV2 OR2A1-AS1-201ENST00000462305 773 ntBASIC19.47■□□□□ 0.71
TRIM54Q9BYV2 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC19.47■□□□□ 0.71
TRIM54Q9BYV2 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM54Q9BYV2 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.47■□□□□ 0.71
TRIM54Q9BYV2 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
TRIM54Q9BYV2 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
TRIM54Q9BYV2 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM54Q9BYV2 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.47■□□□□ 0.71
TRIM54Q9BYV2 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC19.47■□□□□ 0.71
TRIM54Q9BYV2 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM54Q9BYV2 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM54Q9BYV2 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM54Q9BYV2 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM54Q9BYV2 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.46■□□□□ 0.71
TRIM54Q9BYV2 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM54Q9BYV2 CRK-204ENST00000574295 1391 ntTSL 5 BASIC19.46■□□□□ 0.71
TRIM54Q9BYV2 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM54Q9BYV2 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM54Q9BYV2 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
TRIM54Q9BYV2 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM54Q9BYV2 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM54Q9BYV2 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM54Q9BYV2 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.46■□□□□ 0.71
TRIM54Q9BYV2 MAP2K4P1-201ENST00000438453 1195 ntBASIC19.46■□□□□ 0.71
TRIM54Q9BYV2 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.46■□□□□ 0.71
TRIM54Q9BYV2 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC19.46■□□□□ 0.71
TRIM54Q9BYV2 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC19.46■□□□□ 0.71
TRIM54Q9BYV2 GXYLT1P5-201ENST00000614548 1189 ntBASIC19.46■□□□□ 0.71
TRIM54Q9BYV2 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM54Q9BYV2 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM54Q9BYV2 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.46■□□□□ 0.71
TRIM54Q9BYV2 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.46■□□□□ 0.71
TRIM54Q9BYV2 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM54Q9BYV2 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.46■□□□□ 0.71
TRIM54Q9BYV2 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM54Q9BYV2 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
TRIM54Q9BYV2 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
TRIM54Q9BYV2 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM54Q9BYV2 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM54Q9BYV2 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
TRIM54Q9BYV2 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM54Q9BYV2 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM54Q9BYV2 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM54Q9BYV2 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM54Q9BYV2 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM54Q9BYV2 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM54Q9BYV2 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.45■□□□□ 0.7
TRIM54Q9BYV2 MFF-205ENST00000354503 1085 ntTSL 2 BASIC19.45■□□□□ 0.7
TRIM54Q9BYV2 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM54Q9BYV2 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC19.45■□□□□ 0.7
TRIM54Q9BYV2 SERP1-205ENST00000487153 657 ntTSL 4 BASIC19.45■□□□□ 0.7
TRIM54Q9BYV2 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC19.45■□□□□ 0.7
TRIM54Q9BYV2 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM54Q9BYV2 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM54Q9BYV2 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM54Q9BYV2 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM54Q9BYV2 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.45■□□□□ 0.7
TRIM54Q9BYV2 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC19.45■□□□□ 0.7
TRIM54Q9BYV2 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM54Q9BYV2 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM54Q9BYV2 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
TRIM54Q9BYV2 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM54Q9BYV2 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
TRIM54Q9BYV2 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.44■□□□□ 0.7
TRIM54Q9BYV2 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM54Q9BYV2 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM54Q9BYV2 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM54Q9BYV2 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM54Q9BYV2 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.44■□□□□ 0.7
TRIM54Q9BYV2 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
TRIM54Q9BYV2 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM54Q9BYV2 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM54Q9BYV2 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
TRIM54Q9BYV2 AC097658.1-201ENST00000475555 843 ntBASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms