Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CCDC28BQ9BUN5 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
CCDC28BQ9BUN5 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
CCDC28BQ9BUN5 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.2■□□□□ 0.66
CCDC28BQ9BUN5 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC19.2■□□□□ 0.66
CCDC28BQ9BUN5 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC28BQ9BUN5 TERF1P2-201ENST00000583350 1212 ntBASIC19.2■□□□□ 0.66
CCDC28BQ9BUN5 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC28BQ9BUN5 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC28BQ9BUN5 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC28BQ9BUN5 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC28BQ9BUN5 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.2■□□□□ 0.66
CCDC28BQ9BUN5 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CCDC28BQ9BUN5 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC28BQ9BUN5 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC28BQ9BUN5 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
CCDC28BQ9BUN5 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC28BQ9BUN5 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC28BQ9BUN5 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC28BQ9BUN5 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC28BQ9BUN5 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC28BQ9BUN5 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC28BQ9BUN5 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC28BQ9BUN5 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC28BQ9BUN5 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC28BQ9BUN5 AL138781.2-201ENST00000617896 1843 ntBASIC19.19■□□□□ 0.66
CCDC28BQ9BUN5 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
CCDC28BQ9BUN5 NALT1-201ENST00000429224 738 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC28BQ9BUN5 AC123595.1-201ENST00000440769 1046 ntBASIC19.19■□□□□ 0.66
CCDC28BQ9BUN5 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.19■□□□□ 0.66
CCDC28BQ9BUN5 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
CCDC28BQ9BUN5 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.19■□□□□ 0.66
CCDC28BQ9BUN5 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC28BQ9BUN5 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC19.19■□□□□ 0.66
CCDC28BQ9BUN5 AL031963.3-201ENST00000606441 850 ntBASIC19.19■□□□□ 0.66
CCDC28BQ9BUN5 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC28BQ9BUN5 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC28BQ9BUN5 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC28BQ9BUN5 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC28BQ9BUN5 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC28BQ9BUN5 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC28BQ9BUN5 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC28BQ9BUN5 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
CCDC28BQ9BUN5 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.18■□□□□ 0.66
CCDC28BQ9BUN5 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC28BQ9BUN5 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
CCDC28BQ9BUN5 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC28BQ9BUN5 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC28BQ9BUN5 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC28BQ9BUN5 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CCDC28BQ9BUN5 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC28BQ9BUN5 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC28BQ9BUN5 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC28BQ9BUN5 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC28BQ9BUN5 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.18■□□□□ 0.66
CCDC28BQ9BUN5 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC28BQ9BUN5 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.18■□□□□ 0.66
CCDC28BQ9BUN5 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CCDC28BQ9BUN5 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC28BQ9BUN5 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC28BQ9BUN5 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC28BQ9BUN5 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC28BQ9BUN5 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC28BQ9BUN5 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
CCDC28BQ9BUN5 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC28BQ9BUN5 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC28BQ9BUN5 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC28BQ9BUN5 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC28BQ9BUN5 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC28BQ9BUN5 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.17■□□□□ 0.66
CCDC28BQ9BUN5 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC28BQ9BUN5 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.17■□□□□ 0.66
CCDC28BQ9BUN5 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.17■□□□□ 0.66
CCDC28BQ9BUN5 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.17■□□□□ 0.66
CCDC28BQ9BUN5 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.17■□□□□ 0.66
CCDC28BQ9BUN5 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC28BQ9BUN5 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC28BQ9BUN5 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC28BQ9BUN5 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC28BQ9BUN5 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.17■□□□□ 0.66
CCDC28BQ9BUN5 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC28BQ9BUN5 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC19.17■□□□□ 0.66
CCDC28BQ9BUN5 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC19.17■□□□□ 0.66
CCDC28BQ9BUN5 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC28BQ9BUN5 AL049812.1-201ENST00000432563 2267 ntBASIC19.17■□□□□ 0.66
CCDC28BQ9BUN5 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC28BQ9BUN5 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC28BQ9BUN5 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.17■□□□□ 0.66
CCDC28BQ9BUN5 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC28BQ9BUN5 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC28BQ9BUN5 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC28BQ9BUN5 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC28BQ9BUN5 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.16■□□□□ 0.66
CCDC28BQ9BUN5 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC28BQ9BUN5 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC28BQ9BUN5 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC28BQ9BUN5 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC28BQ9BUN5 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC28BQ9BUN5 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC28BQ9BUN5 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms