Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC007375.3-201ENST00000600936 2314 ntBASIC19.87■□□□□ 0.77
HDDC3Q8N4P3 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.87■□□□□ 0.77
HDDC3Q8N4P3 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HDDC3Q8N4P3 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC19.86■□□□□ 0.77
HDDC3Q8N4P3 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HDDC3Q8N4P3 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HDDC3Q8N4P3 SRI-203ENST00000419179 1307 ntTSL 2 BASIC19.86■□□□□ 0.77
HDDC3Q8N4P3 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC19.86■□□□□ 0.77
HDDC3Q8N4P3 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.86■□□□□ 0.77
HDDC3Q8N4P3 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HDDC3Q8N4P3 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HDDC3Q8N4P3 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
HDDC3Q8N4P3 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC19.86■□□□□ 0.77
HDDC3Q8N4P3 MIR6786-201ENST00000616843 113 ntBASIC19.86■□□□□ 0.77
HDDC3Q8N4P3 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC19.86■□□□□ 0.77
HDDC3Q8N4P3 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
HDDC3Q8N4P3 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HDDC3Q8N4P3 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.86■□□□□ 0.77
HDDC3Q8N4P3 AC116351.2-201ENST00000606540 1585 ntBASIC19.86■□□□□ 0.77
HDDC3Q8N4P3 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.86■□□□□ 0.77
HDDC3Q8N4P3 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HDDC3Q8N4P3 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.85■□□□□ 0.77
HDDC3Q8N4P3 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HDDC3Q8N4P3 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HDDC3Q8N4P3 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HDDC3Q8N4P3 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
HDDC3Q8N4P3 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HDDC3Q8N4P3 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HDDC3Q8N4P3 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
HDDC3Q8N4P3 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.85■□□□□ 0.77
HDDC3Q8N4P3 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.85■□□□□ 0.77
HDDC3Q8N4P3 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC19.85■□□□□ 0.77
HDDC3Q8N4P3 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
HDDC3Q8N4P3 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC19.85■□□□□ 0.77
HDDC3Q8N4P3 AC145285.6-201ENST00000604632 637 ntBASIC19.85■□□□□ 0.77
HDDC3Q8N4P3 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC19.85■□□□□ 0.77
HDDC3Q8N4P3 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.85■□□□□ 0.77
HDDC3Q8N4P3 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
HDDC3Q8N4P3 AC018553.1-201ENST00000616682 1458 ntBASIC19.85■□□□□ 0.77
HDDC3Q8N4P3 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HDDC3Q8N4P3 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.85■□□□□ 0.77
HDDC3Q8N4P3 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HDDC3Q8N4P3 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.84■□□□□ 0.77
HDDC3Q8N4P3 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HDDC3Q8N4P3 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HDDC3Q8N4P3 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
HDDC3Q8N4P3 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.84■□□□□ 0.77
HDDC3Q8N4P3 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.84■□□□□ 0.77
HDDC3Q8N4P3 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.84■□□□□ 0.77
HDDC3Q8N4P3 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.84■□□□□ 0.77
HDDC3Q8N4P3 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC19.84■□□□□ 0.77
HDDC3Q8N4P3 TPM1-226ENST00000560959 925 ntTSL 2 BASIC19.84■□□□□ 0.77
HDDC3Q8N4P3 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HDDC3Q8N4P3 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.84■□□□□ 0.77
HDDC3Q8N4P3 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HDDC3Q8N4P3 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.84■□□□□ 0.77
HDDC3Q8N4P3 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HDDC3Q8N4P3 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HDDC3Q8N4P3 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC19.83■□□□□ 0.77
HDDC3Q8N4P3 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HDDC3Q8N4P3 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HDDC3Q8N4P3 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HDDC3Q8N4P3 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
HDDC3Q8N4P3 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HDDC3Q8N4P3 TFP1-202ENST00000475455 1573 ntBASIC19.83■□□□□ 0.77
HDDC3Q8N4P3 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.83■□□□□ 0.77
HDDC3Q8N4P3 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HDDC3Q8N4P3 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HDDC3Q8N4P3 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HDDC3Q8N4P3 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HDDC3Q8N4P3 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.83■□□□□ 0.77
HDDC3Q8N4P3 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
HDDC3Q8N4P3 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
HDDC3Q8N4P3 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HDDC3Q8N4P3 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HDDC3Q8N4P3 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.83■□□□□ 0.76
HDDC3Q8N4P3 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HDDC3Q8N4P3 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.76
HDDC3Q8N4P3 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HDDC3Q8N4P3 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.82■□□□□ 0.76
HDDC3Q8N4P3 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.82■□□□□ 0.76
HDDC3Q8N4P3 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
HDDC3Q8N4P3 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.82■□□□□ 0.76
HDDC3Q8N4P3 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC19.82■□□□□ 0.76
HDDC3Q8N4P3 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
HDDC3Q8N4P3 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC19.82■□□□□ 0.76
HDDC3Q8N4P3 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC19.82■□□□□ 0.76
HDDC3Q8N4P3 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC19.82■□□□□ 0.76
HDDC3Q8N4P3 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC19.82■□□□□ 0.76
HDDC3Q8N4P3 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC19.82■□□□□ 0.76
HDDC3Q8N4P3 CR392000.1-201ENST00000624770 1228 ntBASIC19.82■□□□□ 0.76
HDDC3Q8N4P3 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HDDC3Q8N4P3 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
HDDC3Q8N4P3 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
HDDC3Q8N4P3 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
HDDC3Q8N4P3 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HDDC3Q8N4P3 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HDDC3Q8N4P3 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.82■□□□□ 0.76
HDDC3Q8N4P3 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HDDC3Q8N4P3 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms