Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 SETD8P1-201ENST00000623146 1180 ntBASIC12.38□□□□□ -0.43
LINC00643Q86TS7 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 EML3-212ENST00000494176 2901 ntTSL 2 BASIC12.38□□□□□ -0.43
LINC00643Q86TS7 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC12.37□□□□□ -0.43
LINC00643Q86TS7 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC12.37□□□□□ -0.43
LINC00643Q86TS7 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC12.37□□□□□ -0.43
LINC00643Q86TS7 AL162727.3-201ENST00000635661 2787 ntBASIC12.37□□□□□ -0.43
LINC00643Q86TS7 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC12.37□□□□□ -0.43
LINC00643Q86TS7 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00643Q86TS7 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC12.37□□□□□ -0.43
LINC00643Q86TS7 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00643Q86TS7 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00643Q86TS7 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00643Q86TS7 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC12.37□□□□□ -0.43
LINC00643Q86TS7 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00643Q86TS7 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00643Q86TS7 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC12.37□□□□□ -0.43
LINC00643Q86TS7 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00643Q86TS7 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC12.37□□□□□ -0.43
LINC00643Q86TS7 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00643Q86TS7 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00643Q86TS7 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00643Q86TS7 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00643Q86TS7 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00643Q86TS7 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC12.37□□□□□ -0.43
LINC00643Q86TS7 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00643Q86TS7 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00643Q86TS7 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00643Q86TS7 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC12.37□□□□□ -0.43
LINC00643Q86TS7 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00643Q86TS7 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC12.37□□□□□ -0.43
LINC00643Q86TS7 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00643Q86TS7 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
LINC00643Q86TS7 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00643Q86TS7 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
LINC00643Q86TS7 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
LINC00643Q86TS7 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
LINC00643Q86TS7 GATB-213ENST00000515812 1893 ntTSL 5 BASIC12.36□□□□□ -0.43
LINC00643Q86TS7 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC12.36□□□□□ -0.43
LINC00643Q86TS7 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00643Q86TS7 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00643Q86TS7 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00643Q86TS7 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC12.36□□□□□ -0.43
LINC00643Q86TS7 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00643Q86TS7 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00643Q86TS7 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC12.36□□□□□ -0.43
LINC00643Q86TS7 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00643Q86TS7 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00643Q86TS7 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00643Q86TS7 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC12.36□□□□□ -0.43
LINC00643Q86TS7 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00643Q86TS7 WIZP1-201ENST00000531444 2299 ntBASIC12.36□□□□□ -0.43
LINC00643Q86TS7 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC12.36□□□□□ -0.43
LINC00643Q86TS7 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC12.36□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms