Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 SLC25A1P4-201ENST00000567977 778 ntBASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 ABBA01031674.1-201ENST00000635145 728 ntBASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CSPG4Q6UVK1 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC16.33■□□□□ 0.21
CSPG4Q6UVK1 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC16.33■□□□□ 0.21
CSPG4Q6UVK1 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CSPG4Q6UVK1 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC16.33■□□□□ 0.21
CSPG4Q6UVK1 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CSPG4Q6UVK1 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
CSPG4Q6UVK1 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC16.33■□□□□ 0.21
CSPG4Q6UVK1 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CSPG4Q6UVK1 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CSPG4Q6UVK1 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC16.33■□□□□ 0.2
CSPG4Q6UVK1 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC16.33■□□□□ 0.2
CSPG4Q6UVK1 GRAMD4P8-201ENST00000605465 1115 ntBASIC16.33■□□□□ 0.2
CSPG4Q6UVK1 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CSPG4Q6UVK1 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC16.33■□□□□ 0.2
CSPG4Q6UVK1 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CSPG4Q6UVK1 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CSPG4Q6UVK1 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CSPG4Q6UVK1 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
CSPG4Q6UVK1 AL121603.2-201ENST00000557373 2117 ntBASIC16.33■□□□□ 0.2
CSPG4Q6UVK1 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CSPG4Q6UVK1 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
CSPG4Q6UVK1 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CSPG4Q6UVK1 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC16.33■□□□□ 0.2
CSPG4Q6UVK1 AL121956.5-201ENST00000625261 221 ntBASIC16.33■□□□□ 0.2
CSPG4Q6UVK1 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CSPG4Q6UVK1 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CSPG4Q6UVK1 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC16.32■□□□□ 0.2
CSPG4Q6UVK1 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CSPG4Q6UVK1 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CSPG4Q6UVK1 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC16.32■□□□□ 0.2
CSPG4Q6UVK1 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CSPG4Q6UVK1 PP7080-204ENST00000510714 601 ntTSL 3 BASIC16.32■□□□□ 0.2
CSPG4Q6UVK1 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC16.32■□□□□ 0.2
CSPG4Q6UVK1 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CSPG4Q6UVK1 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
CSPG4Q6UVK1 STAC-204ENST00000457375 1366 ntTSL 2 BASIC16.32■□□□□ 0.2
CSPG4Q6UVK1 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CSPG4Q6UVK1 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CSPG4Q6UVK1 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CSPG4Q6UVK1 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CSPG4Q6UVK1 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC16.31■□□□□ 0.2
CSPG4Q6UVK1 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.31■□□□□ 0.2
CSPG4Q6UVK1 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC16.31■□□□□ 0.2
CSPG4Q6UVK1 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC16.31■□□□□ 0.2
CSPG4Q6UVK1 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CSPG4Q6UVK1 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CSPG4Q6UVK1 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CSPG4Q6UVK1 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
CSPG4Q6UVK1 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CSPG4Q6UVK1 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC16.31■□□□□ 0.2
CSPG4Q6UVK1 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC16.31■□□□□ 0.2
CSPG4Q6UVK1 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC16.31■□□□□ 0.2
CSPG4Q6UVK1 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC16.31■□□□□ 0.2
CSPG4Q6UVK1 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CSPG4Q6UVK1 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC16.31■□□□□ 0.2
CSPG4Q6UVK1 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CSPG4Q6UVK1 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC16.31■□□□□ 0.2
CSPG4Q6UVK1 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CSPG4Q6UVK1 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CSPG4Q6UVK1 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CSPG4Q6UVK1 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CSPG4Q6UVK1 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CSPG4Q6UVK1 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CSPG4Q6UVK1 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC16.3■□□□□ 0.2
CSPG4Q6UVK1 AL117328.2-201ENST00000624617 1940 ntBASIC16.3■□□□□ 0.2
CSPG4Q6UVK1 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CSPG4Q6UVK1 ANKRD20A18P-201ENST00000359341 492 ntBASIC16.3■□□□□ 0.2
CSPG4Q6UVK1 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.3■□□□□ 0.2
CSPG4Q6UVK1 AC007663.1-201ENST00000438948 1240 ntBASIC16.3■□□□□ 0.2
CSPG4Q6UVK1 FDX2-206ENST00000492239 773 ntTSL 2 BASIC16.3■□□□□ 0.2
CSPG4Q6UVK1 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.3■□□□□ 0.2
CSPG4Q6UVK1 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CSPG4Q6UVK1 DGCR10-201ENST00000609839 495 ntBASIC16.3■□□□□ 0.2
CSPG4Q6UVK1 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC16.3■□□□□ 0.2
CSPG4Q6UVK1 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CSPG4Q6UVK1 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CSPG4Q6UVK1 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CSPG4Q6UVK1 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC16.3■□□□□ 0.2
CSPG4Q6UVK1 TUB-203ENST00000534099 1759 ntTSL 2 BASIC16.3■□□□□ 0.2
CSPG4Q6UVK1 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CSPG4Q6UVK1 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CSPG4Q6UVK1 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC16.3■□□□□ 0.2
CSPG4Q6UVK1 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CSPG4Q6UVK1 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC16.3■□□□□ 0.2
CSPG4Q6UVK1 TSPY5P-201ENST00000426936 936 ntBASIC16.3■□□□□ 0.2
CSPG4Q6UVK1 AC092647.4-201ENST00000457211 535 ntBASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms