Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
PDLIM3Q53GG5 AC116050.2-201ENST00000612102 1779 ntBASIC16.33■□□□□ 0.21
PDLIM3Q53GG5 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC16.33■□□□□ 0.21
PDLIM3Q53GG5 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
PDLIM3Q53GG5 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
PDLIM3Q53GG5 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC16.33■□□□□ 0.2
PDLIM3Q53GG5 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PDLIM3Q53GG5 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PDLIM3Q53GG5 MIR718-201ENST00000390190 70 ntBASIC16.33■□□□□ 0.2
PDLIM3Q53GG5 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PDLIM3Q53GG5 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PDLIM3Q53GG5 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC16.33■□□□□ 0.2
PDLIM3Q53GG5 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
PDLIM3Q53GG5 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
PDLIM3Q53GG5 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
PDLIM3Q53GG5 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC16.33■□□□□ 0.2
PDLIM3Q53GG5 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PDLIM3Q53GG5 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PDLIM3Q53GG5 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC16.33■□□□□ 0.2
PDLIM3Q53GG5 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PDLIM3Q53GG5 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PDLIM3Q53GG5 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
PDLIM3Q53GG5 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PDLIM3Q53GG5 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PDLIM3Q53GG5 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC16.33■□□□□ 0.2
PDLIM3Q53GG5 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC16.33■□□□□ 0.2
PDLIM3Q53GG5 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC16.33■□□□□ 0.2
PDLIM3Q53GG5 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PDLIM3Q53GG5 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PDLIM3Q53GG5 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PDLIM3Q53GG5 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
PDLIM3Q53GG5 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.2
PDLIM3Q53GG5 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
PDLIM3Q53GG5 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PDLIM3Q53GG5 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
PDLIM3Q53GG5 AC120498.9-201ENST00000339021 3867 ntBASIC16.32■□□□□ 0.2
PDLIM3Q53GG5 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PDLIM3Q53GG5 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PDLIM3Q53GG5 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PDLIM3Q53GG5 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
PDLIM3Q53GG5 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
PDLIM3Q53GG5 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
PDLIM3Q53GG5 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PDLIM3Q53GG5 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
PDLIM3Q53GG5 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PDLIM3Q53GG5 MIPEPP3-201ENST00000412105 444 ntBASIC16.32■□□□□ 0.2
PDLIM3Q53GG5 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC16.32■□□□□ 0.2
PDLIM3Q53GG5 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC16.32■□□□□ 0.2
PDLIM3Q53GG5 UBE2SP1-201ENST00000450587 669 ntBASIC16.32■□□□□ 0.2
PDLIM3Q53GG5 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC16.32■□□□□ 0.2
PDLIM3Q53GG5 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PDLIM3Q53GG5 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PDLIM3Q53GG5 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PDLIM3Q53GG5 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC16.32■□□□□ 0.2
PDLIM3Q53GG5 MME-217ENST00000616757 1315 ntTSL 5 BASIC16.32■□□□□ 0.2
PDLIM3Q53GG5 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
PDLIM3Q53GG5 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
PDLIM3Q53GG5 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC16.32■□□□□ 0.2
PDLIM3Q53GG5 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM3Q53GG5 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
PDLIM3Q53GG5 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC16.31■□□□□ 0.2
PDLIM3Q53GG5 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC16.31■□□□□ 0.2
PDLIM3Q53GG5 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM3Q53GG5 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM3Q53GG5 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM3Q53GG5 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC16.31■□□□□ 0.2
PDLIM3Q53GG5 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC16.31■□□□□ 0.2
PDLIM3Q53GG5 MIR4497-201ENST00000583208 89 ntBASIC16.31■□□□□ 0.2
PDLIM3Q53GG5 AC120498.10-201ENST00000621827 505 ntBASIC16.31■□□□□ 0.2
PDLIM3Q53GG5 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC16.31■□□□□ 0.2
PDLIM3Q53GG5 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM3Q53GG5 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM3Q53GG5 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM3Q53GG5 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM3Q53GG5 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
PDLIM3Q53GG5 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM3Q53GG5 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
PDLIM3Q53GG5 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC16.31■□□□□ 0.2
PDLIM3Q53GG5 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM3Q53GG5 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 PEX7-202ENST00000367756 680 ntTSL 3 BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms