Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
COL7A1Q02388 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC14.23□□□□□ -0.13
COL7A1Q02388 CKBP1-201ENST00000565489 1086 ntBASIC14.23□□□□□ -0.13
COL7A1Q02388 MIR3180-1-201ENST00000580374 94 ntBASIC14.23□□□□□ -0.13
COL7A1Q02388 MIR3180-3-201ENST00000584616 94 ntBASIC14.23□□□□□ -0.13
COL7A1Q02388 CYGB-204ENST00000589342 815 ntTSL 3 BASIC14.23□□□□□ -0.13
COL7A1Q02388 AC012313.10-201ENST00000623509 926 ntBASIC14.23□□□□□ -0.13
COL7A1Q02388 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC14.23□□□□□ -0.13
COL7A1Q02388 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL7A1Q02388 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL7A1Q02388 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL7A1Q02388 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL7A1Q02388 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL7A1Q02388 H19-201ENST00000411754 1788 ntTSL 5 BASIC14.23□□□□□ -0.13
COL7A1Q02388 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC14.23□□□□□ -0.13
COL7A1Q02388 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC14.23□□□□□ -0.13
COL7A1Q02388 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC14.23□□□□□ -0.13
COL7A1Q02388 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC14.23□□□□□ -0.13
COL7A1Q02388 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC14.23□□□□□ -0.13
COL7A1Q02388 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
COL7A1Q02388 AL441883.1-201ENST00000566170 1045 ntBASIC14.23□□□□□ -0.13
COL7A1Q02388 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL7A1Q02388 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL7A1Q02388 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL7A1Q02388 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL7A1Q02388 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC14.22□□□□□ -0.13
COL7A1Q02388 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC14.22□□□□□ -0.13
COL7A1Q02388 NPAP1P7-201ENST00000613027 823 ntBASIC14.22□□□□□ -0.13
COL7A1Q02388 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL7A1Q02388 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL7A1Q02388 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL7A1Q02388 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL7A1Q02388 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL7A1Q02388 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC14.22□□□□□ -0.13
COL7A1Q02388 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC14.22□□□□□ -0.13
COL7A1Q02388 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL7A1Q02388 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL7A1Q02388 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL7A1Q02388 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL7A1Q02388 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL7A1Q02388 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL7A1Q02388 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL7A1Q02388 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC14.22□□□□□ -0.13
COL7A1Q02388 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC14.21□□□□□ -0.13
COL7A1Q02388 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC14.21□□□□□ -0.13
COL7A1Q02388 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL7A1Q02388 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC14.21□□□□□ -0.13
COL7A1Q02388 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC14.21□□□□□ -0.13
COL7A1Q02388 AC010653.2-201ENST00000623505 997 ntBASIC14.21□□□□□ -0.13
COL7A1Q02388 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
COL7A1Q02388 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
COL7A1Q02388 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL7A1Q02388 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC14.21□□□□□ -0.13
COL7A1Q02388 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC14.21□□□□□ -0.13
COL7A1Q02388 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL7A1Q02388 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL7A1Q02388 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL7A1Q02388 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC14.21□□□□□ -0.13
COL7A1Q02388 AC006538.3-201ENST00000612495 578 ntBASIC14.21□□□□□ -0.13
COL7A1Q02388 AC141257.4-201ENST00000634557 245 ntBASIC14.21□□□□□ -0.13
COL7A1Q02388 AC136944.6-201ENST00000634818 245 ntBASIC14.21□□□□□ -0.13
COL7A1Q02388 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL7A1Q02388 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
COL7A1Q02388 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL7A1Q02388 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC14.21□□□□□ -0.14
COL7A1Q02388 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
COL7A1Q02388 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
COL7A1Q02388 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
COL7A1Q02388 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
COL7A1Q02388 YBX1P10-201ENST00000444752 975 ntBASIC14.21□□□□□ -0.14
COL7A1Q02388 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
COL7A1Q02388 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC14.21□□□□□ -0.14
COL7A1Q02388 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
COL7A1Q02388 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL7A1Q02388 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
COL7A1Q02388 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC14.2□□□□□ -0.14
COL7A1Q02388 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL7A1Q02388 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL7A1Q02388 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
COL7A1Q02388 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL7A1Q02388 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL7A1Q02388 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC14.2□□□□□ -0.14
COL7A1Q02388 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL7A1Q02388 AC004980.1-204ENST00000429707 299 ntBASIC14.2□□□□□ -0.14
COL7A1Q02388 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC14.2□□□□□ -0.14
COL7A1Q02388 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC14.2□□□□□ -0.14
COL7A1Q02388 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL7A1Q02388 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
COL7A1Q02388 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL7A1Q02388 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL7A1Q02388 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
COL7A1Q02388 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL7A1Q02388 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL7A1Q02388 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL7A1Q02388 AL845331.1-201ENST00000424978 1190 ntBASIC14.2□□□□□ -0.14
COL7A1Q02388 HOMER2P1-201ENST00000455653 964 ntBASIC14.2□□□□□ -0.14
COL7A1Q02388 AC009078.2-202ENST00000463353 338 ntBASIC14.2□□□□□ -0.14
COL7A1Q02388 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL7A1Q02388 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
COL7A1Q02388 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms