Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HDAC4P56524 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.64■□□□□ 0.89
HDAC4P56524 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HDAC4P56524 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HDAC4P56524 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.64■□□□□ 0.89
HDAC4P56524 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HDAC4P56524 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.64■□□□□ 0.89
HDAC4P56524 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC20.64■□□□□ 0.89
HDAC4P56524 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HDAC4P56524 RNA5SP413-201ENST00000516373 109 ntBASIC20.64■□□□□ 0.89
HDAC4P56524 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.64■□□□□ 0.89
HDAC4P56524 UNC93B5-201ENST00000530315 699 ntBASIC20.64■□□□□ 0.89
HDAC4P56524 KRT18P6-201ENST00000555540 1265 ntBASIC20.64■□□□□ 0.89
HDAC4P56524 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HDAC4P56524 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HDAC4P56524 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HDAC4P56524 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HDAC4P56524 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.64■□□□□ 0.89
HDAC4P56524 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.64■□□□□ 0.89
HDAC4P56524 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HDAC4P56524 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.64■□□□□ 0.89
HDAC4P56524 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HDAC4P56524 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.64■□□□□ 0.89
HDAC4P56524 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HDAC4P56524 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HDAC4P56524 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HDAC4P56524 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
HDAC4P56524 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
HDAC4P56524 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HDAC4P56524 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
HDAC4P56524 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HDAC4P56524 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HDAC4P56524 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HDAC4P56524 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HDAC4P56524 RPS2P52-201ENST00000469610 820 ntBASIC20.63■□□□□ 0.89
HDAC4P56524 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
HDAC4P56524 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.63■□□□□ 0.89
HDAC4P56524 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.63■□□□□ 0.89
HDAC4P56524 AC116351.2-201ENST00000606540 1585 ntBASIC20.63■□□□□ 0.89
HDAC4P56524 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
HDAC4P56524 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HDAC4P56524 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
HDAC4P56524 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.62■□□□□ 0.89
HDAC4P56524 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.62■□□□□ 0.89
HDAC4P56524 AC018553.1-201ENST00000616682 1458 ntBASIC20.62■□□□□ 0.89
HDAC4P56524 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HDAC4P56524 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HDAC4P56524 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
HDAC4P56524 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
HDAC4P56524 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
HDAC4P56524 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.62■□□□□ 0.89
HDAC4P56524 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC20.62■□□□□ 0.89
HDAC4P56524 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
HDAC4P56524 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HDAC4P56524 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HDAC4P56524 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
HDAC4P56524 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.62■□□□□ 0.89
HDAC4P56524 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.62■□□□□ 0.89
HDAC4P56524 UNC93B4-201ENST00000505679 747 ntBASIC20.62■□□□□ 0.89
HDAC4P56524 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
HDAC4P56524 AC120498.8-201ENST00000614275 531 ntBASIC20.62■□□□□ 0.89
HDAC4P56524 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.62■□□□□ 0.89
HDAC4P56524 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
HDAC4P56524 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.62■□□□□ 0.89
HDAC4P56524 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HDAC4P56524 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HDAC4P56524 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
HDAC4P56524 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.62■□□□□ 0.89
HDAC4P56524 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HDAC4P56524 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HDAC4P56524 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HDAC4P56524 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.61■□□□□ 0.89
HDAC4P56524 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC20.61■□□□□ 0.89
HDAC4P56524 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.61■□□□□ 0.89
HDAC4P56524 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.61■□□□□ 0.89
HDAC4P56524 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20.61■□□□□ 0.89
HDAC4P56524 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.61■□□□□ 0.89
HDAC4P56524 GAS7-202ENST00000396115 929 ntTSL 5 BASIC20.61■□□□□ 0.89
HDAC4P56524 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.61■□□□□ 0.89
HDAC4P56524 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.61■□□□□ 0.89
HDAC4P56524 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.61■□□□□ 0.89
HDAC4P56524 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.61■□□□□ 0.89
HDAC4P56524 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC20.61■□□□□ 0.89
HDAC4P56524 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HDAC4P56524 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.61■□□□□ 0.89
HDAC4P56524 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.61■□□□□ 0.89
HDAC4P56524 AC008403.3-201ENST00000598924 454 ntBASIC20.61■□□□□ 0.89
HDAC4P56524 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20.61■□□□□ 0.89
HDAC4P56524 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HDAC4P56524 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.61■□□□□ 0.89
HDAC4P56524 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HDAC4P56524 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
HDAC4P56524 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.61■□□□□ 0.89
HDAC4P56524 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HDAC4P56524 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HDAC4P56524 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HDAC4P56524 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
HDAC4P56524 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
HDAC4P56524 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HDAC4P56524 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms