Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VCPP55072 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VCPP55072 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VCPP55072 AC239809.2-201ENST00000415381 517 ntBASIC21.15■□□□□ 0.98
VCPP55072 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC21.15■□□□□ 0.98
VCPP55072 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC21.15■□□□□ 0.98
VCPP55072 AC105020.6-201ENST00000621523 1217 ntBASIC21.15■□□□□ 0.98
VCPP55072 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
VCPP55072 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC21.15■□□□□ 0.98
VCPP55072 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC21.15■□□□□ 0.98
VCPP55072 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
VCPP55072 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
VCPP55072 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
VCPP55072 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
VCPP55072 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
VCPP55072 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
VCPP55072 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.98
VCPP55072 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC21.14■□□□□ 0.98
VCPP55072 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
VCPP55072 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
VCPP55072 CRK-204ENST00000574295 1391 ntTSL 5 BASIC21.14■□□□□ 0.98
VCPP55072 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
VCPP55072 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
VCPP55072 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
VCPP55072 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VCPP55072 THEM4-205ENST00000489410 643 ntTSL 2 BASIC21.14■□□□□ 0.97
VCPP55072 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC21.14■□□□□ 0.97
VCPP55072 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC21.14■□□□□ 0.97
VCPP55072 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC21.14■□□□□ 0.97
VCPP55072 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC21.14■□□□□ 0.97
VCPP55072 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
VCPP55072 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.14■□□□□ 0.97
VCPP55072 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VCPP55072 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
VCPP55072 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
VCPP55072 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VCPP55072 AC092720.2-201ENST00000602388 1665 ntBASIC21.14■□□□□ 0.97
VCPP55072 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
VCPP55072 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC21.14■□□□□ 0.97
VCPP55072 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.14■□□□□ 0.97
VCPP55072 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC21.14■□□□□ 0.97
VCPP55072 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC21.14■□□□□ 0.97
VCPP55072 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
VCPP55072 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VCPP55072 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
VCPP55072 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
VCPP55072 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VCPP55072 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC21.13■□□□□ 0.97
VCPP55072 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
VCPP55072 ME2-218ENST00000640965 2476 ntTSL 5 BASIC21.13■□□□□ 0.97
VCPP55072 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VCPP55072 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC21.13■□□□□ 0.97
VCPP55072 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
VCPP55072 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VCPP55072 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VCPP55072 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VCPP55072 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VCPP55072 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
VCPP55072 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
VCPP55072 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VCPP55072 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VCPP55072 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC21.13■□□□□ 0.97
VCPP55072 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
VCPP55072 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC21.13■□□□□ 0.97
VCPP55072 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC21.13■□□□□ 0.97
VCPP55072 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.13■□□□□ 0.97
VCPP55072 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VCPP55072 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
VCPP55072 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
VCPP55072 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VCPP55072 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.12■□□□□ 0.97
VCPP55072 AC099778.1-201ENST00000568593 1911 ntBASIC21.12■□□□□ 0.97
VCPP55072 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC21.12■□□□□ 0.97
VCPP55072 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC21.12■□□□□ 0.97
VCPP55072 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
VCPP55072 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
VCPP55072 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
VCPP55072 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VCPP55072 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC21.12■□□□□ 0.97
VCPP55072 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VCPP55072 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC21.12■□□□□ 0.97
VCPP55072 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC21.12■□□□□ 0.97
VCPP55072 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC21.12■□□□□ 0.97
VCPP55072 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VCPP55072 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VCPP55072 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
VCPP55072 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VCPP55072 AC087633.2-202ENST00000565166 1439 ntBASIC21.12■□□□□ 0.97
VCPP55072 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
VCPP55072 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VCPP55072 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VCPP55072 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
VCPP55072 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
VCPP55072 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VCPP55072 PCDHAC2-203ENST00000615316 3011 ntBASIC21.11■□□□□ 0.97
VCPP55072 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC21.11■□□□□ 0.97
VCPP55072 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC21.11■□□□□ 0.97
VCPP55072 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.11■□□□□ 0.97
VCPP55072 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VCPP55072 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms