Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
COL18A1P39060 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
COL18A1P39060 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC26.26■■□□□ 1.79
COL18A1P39060 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
COL18A1P39060 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC26.26■■□□□ 1.79
COL18A1P39060 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
COL18A1P39060 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC26.26■■□□□ 1.79
COL18A1P39060 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
COL18A1P39060 AL117328.2-201ENST00000624617 1940 ntBASIC26.26■■□□□ 1.79
COL18A1P39060 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
COL18A1P39060 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC26.26■■□□□ 1.79
COL18A1P39060 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC26.26■■□□□ 1.79
COL18A1P39060 AP000550.4-202ENST00000639755 178 ntBASIC26.26■■□□□ 1.79
COL18A1P39060 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
COL18A1P39060 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
COL18A1P39060 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC26.26■■□□□ 1.79
COL18A1P39060 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
COL18A1P39060 CD70-202ENST00000423145 881 ntTSL 2 BASIC26.25■■□□□ 1.79
COL18A1P39060 GLRB-205ENST00000512619 728 ntTSL 3 BASIC26.25■■□□□ 1.79
COL18A1P39060 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC26.25■■□□□ 1.79
COL18A1P39060 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
COL18A1P39060 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC26.25■■□□□ 1.79
COL18A1P39060 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
COL18A1P39060 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
COL18A1P39060 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
COL18A1P39060 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
COL18A1P39060 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
COL18A1P39060 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
COL18A1P39060 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
COL18A1P39060 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC26.25■■□□□ 1.79
COL18A1P39060 AC091076.1-201ENST00000610741 619 ntBASIC26.25■■□□□ 1.79
COL18A1P39060 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
COL18A1P39060 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC26.25■■□□□ 1.79
COL18A1P39060 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC26.25■■□□□ 1.79
COL18A1P39060 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC26.24■■□□□ 1.79
COL18A1P39060 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC26.24■■□□□ 1.79
COL18A1P39060 CYGB-204ENST00000589342 815 ntTSL 3 BASIC26.24■■□□□ 1.79
COL18A1P39060 AL121894.2-201ENST00000602977 491 ntBASIC26.24■■□□□ 1.79
COL18A1P39060 AC083849.1-201ENST00000615227 514 ntBASIC26.24■■□□□ 1.79
COL18A1P39060 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC26.24■■□□□ 1.79
COL18A1P39060 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC26.24■■□□□ 1.79
COL18A1P39060 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
COL18A1P39060 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
COL18A1P39060 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC26.24■■□□□ 1.79
COL18A1P39060 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC26.24■■□□□ 1.79
COL18A1P39060 FP700111.2-201ENST00000619190 1892 ntBASIC26.23■■□□□ 1.79
COL18A1P39060 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
COL18A1P39060 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
COL18A1P39060 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
COL18A1P39060 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
COL18A1P39060 BX664615.1-201ENST00000443558 458 ntBASIC26.23■■□□□ 1.79
COL18A1P39060 AC009947.2-201ENST00000444014 672 ntBASIC26.23■■□□□ 1.79
COL18A1P39060 GXYLT1P6-201ENST00000456472 1187 ntBASIC26.23■■□□□ 1.79
COL18A1P39060 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC26.23■■□□□ 1.79
COL18A1P39060 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC26.23■■□□□ 1.79
COL18A1P39060 AL023803.3-201ENST00000615559 522 ntBASIC26.23■■□□□ 1.79
COL18A1P39060 AC130371.2-201ENST00000619443 611 ntBASIC26.23■■□□□ 1.79
COL18A1P39060 AC116407.4-201ENST00000623319 1061 ntBASIC26.23■■□□□ 1.79
COL18A1P39060 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC26.23■■□□□ 1.79
COL18A1P39060 AC141257.4-201ENST00000634557 245 ntBASIC26.23■■□□□ 1.79
COL18A1P39060 AC136944.6-201ENST00000634818 245 ntBASIC26.23■■□□□ 1.79
COL18A1P39060 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC26.23■■□□□ 1.79
COL18A1P39060 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
COL18A1P39060 BID-203ENST00000399765 1879 ntTSL 2 BASIC26.23■■□□□ 1.79
COL18A1P39060 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
COL18A1P39060 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
COL18A1P39060 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
COL18A1P39060 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
COL18A1P39060 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC26.23■■□□□ 1.79
COL18A1P39060 RNF152P1-201ENST00000397754 604 ntBASIC26.23■■□□□ 1.79
COL18A1P39060 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
COL18A1P39060 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC26.23■■□□□ 1.79
COL18A1P39060 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC26.22■■□□□ 1.79
COL18A1P39060 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
COL18A1P39060 AC006128.1-201ENST00000624704 1661 ntBASIC26.22■■□□□ 1.79
COL18A1P39060 TMEM179-206ENST00000616017 1645 ntBASIC26.22■■□□□ 1.79
COL18A1P39060 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC26.22■■□□□ 1.79
COL18A1P39060 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
COL18A1P39060 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC26.22■■□□□ 1.79
COL18A1P39060 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
COL18A1P39060 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC26.22■■□□□ 1.79
COL18A1P39060 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC26.22■■□□□ 1.79
COL18A1P39060 AL359075.1-203ENST00000462729 1002 ntBASIC26.22■■□□□ 1.79
COL18A1P39060 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
COL18A1P39060 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC26.22■■□□□ 1.79
COL18A1P39060 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
COL18A1P39060 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
COL18A1P39060 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
COL18A1P39060 AC092338.2-201ENST00000568827 1415 ntBASIC26.22■■□□□ 1.79
COL18A1P39060 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC26.21■■□□□ 1.79
COL18A1P39060 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC26.21■■□□□ 1.79
COL18A1P39060 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
COL18A1P39060 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC26.21■■□□□ 1.79
COL18A1P39060 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
COL18A1P39060 COPE-203ENST00000351079 907 ntTSL 2 BASIC26.21■■□□□ 1.79
COL18A1P39060 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC26.21■■□□□ 1.79
COL18A1P39060 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
COL18A1P39060 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
COL18A1P39060 CCR12P-201ENST00000446203 998 ntBASIC26.21■■□□□ 1.79
COL18A1P39060 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC26.21■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms