Protein–RNA interactions for Protein: P31645

SLC6A4, Sodium-dependent serotonin transporter, humanhuman

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A4P31645 RARRES2P10-201ENST00000564312 460 ntBASIC20.34■□□□□ 0.85
SLC6A4P31645 AC233702.5-201ENST00000584107 538 ntBASIC20.34■□□□□ 0.85
SLC6A4P31645 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SLC6A4P31645 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SLC6A4P31645 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
SLC6A4P31645 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SLC6A4P31645 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.34■□□□□ 0.85
SLC6A4P31645 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.85
SLC6A4P31645 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
SLC6A4P31645 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20.33■□□□□ 0.85
SLC6A4P31645 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.33■□□□□ 0.85
SLC6A4P31645 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
SLC6A4P31645 MDFI-202ENST00000373050 809 ntTSL 2 BASIC20.33■□□□□ 0.85
SLC6A4P31645 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SLC6A4P31645 AC012618.2-201ENST00000428058 849 ntBASIC20.33■□□□□ 0.85
SLC6A4P31645 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SLC6A4P31645 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.33■□□□□ 0.85
SLC6A4P31645 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC20.33■□□□□ 0.85
SLC6A4P31645 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SLC6A4P31645 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC20.33■□□□□ 0.85
SLC6A4P31645 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.33■□□□□ 0.85
SLC6A4P31645 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.33■□□□□ 0.84
SLC6A4P31645 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
SLC6A4P31645 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SLC6A4P31645 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
SLC6A4P31645 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
SLC6A4P31645 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SLC6A4P31645 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
SLC6A4P31645 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.32■□□□□ 0.84
SLC6A4P31645 HTR7P1-201ENST00000538670 1336 ntBASIC20.32■□□□□ 0.84
SLC6A4P31645 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
SLC6A4P31645 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SLC6A4P31645 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SLC6A4P31645 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SLC6A4P31645 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
SLC6A4P31645 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SLC6A4P31645 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC20.32■□□□□ 0.84
SLC6A4P31645 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.32■□□□□ 0.84
SLC6A4P31645 AC004264.1-201ENST00000608354 794 ntBASIC20.32■□□□□ 0.84
SLC6A4P31645 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SLC6A4P31645 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.32■□□□□ 0.84
SLC6A4P31645 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SLC6A4P31645 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
SLC6A4P31645 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SLC6A4P31645 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SLC6A4P31645 AC112907.3-201ENST00000577781 2400 ntBASIC20.32■□□□□ 0.84
SLC6A4P31645 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
SLC6A4P31645 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.31■□□□□ 0.84
SLC6A4P31645 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SLC6A4P31645 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SLC6A4P31645 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.31■□□□□ 0.84
SLC6A4P31645 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SLC6A4P31645 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
SLC6A4P31645 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC20.31■□□□□ 0.84
SLC6A4P31645 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SLC6A4P31645 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.31■□□□□ 0.84
SLC6A4P31645 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SLC6A4P31645 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
SLC6A4P31645 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
SLC6A4P31645 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
SLC6A4P31645 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.31■□□□□ 0.84
SLC6A4P31645 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.3■□□□□ 0.84
SLC6A4P31645 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SLC6A4P31645 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
SLC6A4P31645 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.3■□□□□ 0.84
SLC6A4P31645 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SLC6A4P31645 LINC01521-201ENST00000504184 1943 ntBASIC20.3■□□□□ 0.84
SLC6A4P31645 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
SLC6A4P31645 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
SLC6A4P31645 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
SLC6A4P31645 SNORA78-201ENST00000459373 127 ntBASIC20.3■□□□□ 0.84
SLC6A4P31645 AC113410.3-201ENST00000623366 203 ntBASIC20.3■□□□□ 0.84
SLC6A4P31645 AL049637.2-201ENST00000641778 930 ntBASIC20.3■□□□□ 0.84
SLC6A4P31645 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
SLC6A4P31645 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SLC6A4P31645 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC20.3■□□□□ 0.84
SLC6A4P31645 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SLC6A4P31645 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
SLC6A4P31645 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
SLC6A4P31645 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
SLC6A4P31645 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC20.3■□□□□ 0.84
SLC6A4P31645 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SLC6A4P31645 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SLC6A4P31645 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SLC6A4P31645 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SLC6A4P31645 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.29■□□□□ 0.84
SLC6A4P31645 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.29■□□□□ 0.84
SLC6A4P31645 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SLC6A4P31645 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.29■□□□□ 0.84
SLC6A4P31645 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SLC6A4P31645 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SLC6A4P31645 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SLC6A4P31645 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SLC6A4P31645 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
SLC6A4P31645 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SLC6A4P31645 YBX1P10-201ENST00000444752 975 ntBASIC20.29■□□□□ 0.84
SLC6A4P31645 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.29■□□□□ 0.84
SLC6A4P31645 AF186192.3-201ENST00000583427 947 ntBASIC20.29■□□□□ 0.84
SLC6A4P31645 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC20.29■□□□□ 0.84
SLC6A4P31645 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 70 ms