Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC25.09■■□□□ 1.61
COL5A3P25940 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
COL5A3P25940 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC25.09■■□□□ 1.61
COL5A3P25940 AP000550.4-202ENST00000639755 178 ntBASIC25.09■■□□□ 1.61
COL5A3P25940 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC25.09■■□□□ 1.61
COL5A3P25940 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC25.08■■□□□ 1.61
COL5A3P25940 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
COL5A3P25940 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
COL5A3P25940 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
COL5A3P25940 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC25.08■■□□□ 1.61
COL5A3P25940 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
COL5A3P25940 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC25.08■■□□□ 1.61
COL5A3P25940 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
COL5A3P25940 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC25.08■■□□□ 1.61
COL5A3P25940 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC25.08■■□□□ 1.61
COL5A3P25940 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
COL5A3P25940 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC25.08■■□□□ 1.6
COL5A3P25940 BID-212ENST00000614949 1988 ntTSL 5 BASIC25.07■■□□□ 1.6
COL5A3P25940 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
COL5A3P25940 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
COL5A3P25940 CCR12P-201ENST00000446203 998 ntBASIC25.07■■□□□ 1.6
COL5A3P25940 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC25.07■■□□□ 1.6
COL5A3P25940 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC25.07■■□□□ 1.6
COL5A3P25940 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC25.07■■□□□ 1.6
COL5A3P25940 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC25.07■■□□□ 1.6
COL5A3P25940 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC25.07■■□□□ 1.6
COL5A3P25940 AC006128.1-201ENST00000624704 1661 ntBASIC25.07■■□□□ 1.6
COL5A3P25940 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC25.07■■□□□ 1.6
COL5A3P25940 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC25.07■■□□□ 1.6
COL5A3P25940 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
COL5A3P25940 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC25.07■■□□□ 1.6
COL5A3P25940 FP700111.2-201ENST00000619190 1892 ntBASIC25.07■■□□□ 1.6
COL5A3P25940 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
COL5A3P25940 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC25.06■■□□□ 1.6
COL5A3P25940 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC25.06■■□□□ 1.6
COL5A3P25940 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC25.06■■□□□ 1.6
COL5A3P25940 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
COL5A3P25940 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
COL5A3P25940 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC25.06■■□□□ 1.6
COL5A3P25940 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC25.06■■□□□ 1.6
COL5A3P25940 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC25.06■■□□□ 1.6
COL5A3P25940 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC25.06■■□□□ 1.6
COL5A3P25940 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC25.06■■□□□ 1.6
COL5A3P25940 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC25.06■■□□□ 1.6
COL5A3P25940 AC008622.2-201ENST00000617006 1229 ntBASIC25.06■■□□□ 1.6
COL5A3P25940 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC25.06■■□□□ 1.6
COL5A3P25940 AC116407.4-201ENST00000623319 1061 ntBASIC25.06■■□□□ 1.6
COL5A3P25940 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
COL5A3P25940 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC25.06■■□□□ 1.6
COL5A3P25940 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC25.06■■□□□ 1.6
COL5A3P25940 BID-203ENST00000399765 1879 ntTSL 2 BASIC25.06■■□□□ 1.6
COL5A3P25940 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
COL5A3P25940 COPE-203ENST00000351079 907 ntTSL 2 BASIC25.06■■□□□ 1.6
COL5A3P25940 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC25.06■■□□□ 1.6
COL5A3P25940 AC009947.2-201ENST00000444014 672 ntBASIC25.06■■□□□ 1.6
COL5A3P25940 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC25.06■■□□□ 1.6
COL5A3P25940 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC25.06■■□□□ 1.6
COL5A3P25940 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC25.06■■□□□ 1.6
COL5A3P25940 AC139887.4-201ENST00000607877 719 ntBASIC25.06■■□□□ 1.6
COL5A3P25940 AC091076.1-201ENST00000610741 619 ntBASIC25.06■■□□□ 1.6
COL5A3P25940 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC25.05■■□□□ 1.6
COL5A3P25940 TMEM179-206ENST00000616017 1645 ntBASIC25.05■■□□□ 1.6
COL5A3P25940 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
COL5A3P25940 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC25.05■■□□□ 1.6
COL5A3P25940 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC25.05■■□□□ 1.6
COL5A3P25940 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
COL5A3P25940 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC25.05■■□□□ 1.6
COL5A3P25940 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC25.05■■□□□ 1.6
COL5A3P25940 CD70-202ENST00000423145 881 ntTSL 2 BASIC25.05■■□□□ 1.6
COL5A3P25940 AC008040.2-201ENST00000461049 708 ntBASIC25.05■■□□□ 1.6
COL5A3P25940 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC25.05■■□□□ 1.6
COL5A3P25940 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC25.05■■□□□ 1.6
COL5A3P25940 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
COL5A3P25940 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
COL5A3P25940 KRT16P6-202ENST00000425692 1426 ntBASIC25.04■■□□□ 1.6
COL5A3P25940 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC25.04■■□□□ 1.6
COL5A3P25940 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
COL5A3P25940 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC25.04■■□□□ 1.6
COL5A3P25940 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC25.04■■□□□ 1.6
COL5A3P25940 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
COL5A3P25940 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC25.04■■□□□ 1.6
COL5A3P25940 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC25.04■■□□□ 1.6
COL5A3P25940 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC25.04■■□□□ 1.6
COL5A3P25940 AC141257.4-201ENST00000634557 245 ntBASIC25.04■■□□□ 1.6
COL5A3P25940 AC136944.6-201ENST00000634818 245 ntBASIC25.04■■□□□ 1.6
COL5A3P25940 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
COL5A3P25940 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
COL5A3P25940 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
COL5A3P25940 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC25.03■■□□□ 1.6
COL5A3P25940 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
COL5A3P25940 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC25.03■■□□□ 1.6
COL5A3P25940 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
COL5A3P25940 AL121894.2-201ENST00000602977 491 ntBASIC25.03■■□□□ 1.6
COL5A3P25940 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
COL5A3P25940 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC25.03■■□□□ 1.6
COL5A3P25940 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC25.03■■□□□ 1.6
COL5A3P25940 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
COL5A3P25940 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC25.03■■□□□ 1.6
COL5A3P25940 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC25.03■■□□□ 1.6
COL5A3P25940 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms