Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC23.33■■□□□ 1.33
HMGB1P09429 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
HMGB1P09429 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC23.33■■□□□ 1.33
HMGB1P09429 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC23.33■■□□□ 1.33
HMGB1P09429 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
HMGB1P09429 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
HMGB1P09429 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
HMGB1P09429 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
HMGB1P09429 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC23.33■■□□□ 1.33
HMGB1P09429 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC23.33■■□□□ 1.33
HMGB1P09429 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC23.33■■□□□ 1.33
HMGB1P09429 RPS2P52-201ENST00000469610 820 ntBASIC23.33■■□□□ 1.33
HMGB1P09429 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
HMGB1P09429 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
HMGB1P09429 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC23.33■■□□□ 1.32
HMGB1P09429 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.32
HMGB1P09429 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
HMGB1P09429 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC23.32■■□□□ 1.32
HMGB1P09429 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
HMGB1P09429 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
HMGB1P09429 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC23.32■■□□□ 1.32
HMGB1P09429 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC23.32■■□□□ 1.32
HMGB1P09429 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
HMGB1P09429 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
HMGB1P09429 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
HMGB1P09429 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
HMGB1P09429 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC23.32■■□□□ 1.32
HMGB1P09429 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC23.32■■□□□ 1.32
HMGB1P09429 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC23.32■■□□□ 1.32
HMGB1P09429 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
HMGB1P09429 INO80E-214ENST00000620599 515 ntTSL 2 BASIC23.32■■□□□ 1.32
HMGB1P09429 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC23.32■■□□□ 1.32
HMGB1P09429 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC23.32■■□□□ 1.32
HMGB1P09429 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
HMGB1P09429 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
HMGB1P09429 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC23.32■■□□□ 1.32
HMGB1P09429 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
HMGB1P09429 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC23.31■■□□□ 1.32
HMGB1P09429 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
HMGB1P09429 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
HMGB1P09429 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
HMGB1P09429 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC23.31■■□□□ 1.32
HMGB1P09429 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC23.31■■□□□ 1.32
HMGB1P09429 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
HMGB1P09429 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC23.31■■□□□ 1.32
HMGB1P09429 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
HMGB1P09429 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC23.31■■□□□ 1.32
HMGB1P09429 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC23.31■■□□□ 1.32
HMGB1P09429 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC23.31■■□□□ 1.32
HMGB1P09429 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
HMGB1P09429 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
HMGB1P09429 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
HMGB1P09429 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
HMGB1P09429 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
HMGB1P09429 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
HMGB1P09429 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
HMGB1P09429 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
HMGB1P09429 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
HMGB1P09429 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC23.3■■□□□ 1.32
HMGB1P09429 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
HMGB1P09429 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
HMGB1P09429 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
HMGB1P09429 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
HMGB1P09429 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
HMGB1P09429 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC23.3■■□□□ 1.32
HMGB1P09429 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC23.3■■□□□ 1.32
HMGB1P09429 EMC9-206ENST00000560403 872 ntTSL 2 BASIC23.3■■□□□ 1.32
HMGB1P09429 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC23.3■■□□□ 1.32
HMGB1P09429 AC120498.8-201ENST00000614275 531 ntBASIC23.3■■□□□ 1.32
HMGB1P09429 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC23.3■■□□□ 1.32
HMGB1P09429 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
HMGB1P09429 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
HMGB1P09429 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
HMGB1P09429 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC23.3■■□□□ 1.32
HMGB1P09429 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
HMGB1P09429 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
HMGB1P09429 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC23.29■■□□□ 1.32
HMGB1P09429 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
HMGB1P09429 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
HMGB1P09429 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC23.29■■□□□ 1.32
HMGB1P09429 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
HMGB1P09429 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC23.29■■□□□ 1.32
HMGB1P09429 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
HMGB1P09429 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
HMGB1P09429 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
HMGB1P09429 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC23.29■■□□□ 1.32
HMGB1P09429 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC23.29■■□□□ 1.32
HMGB1P09429 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC23.29■■□□□ 1.32
HMGB1P09429 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC23.29■■□□□ 1.32
HMGB1P09429 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
HMGB1P09429 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC23.29■■□□□ 1.32
HMGB1P09429 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC23.29■■□□□ 1.32
HMGB1P09429 AL121906.2-201ENST00000621597 723 ntBASIC23.29■■□□□ 1.32
HMGB1P09429 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
HMGB1P09429 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
HMGB1P09429 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
HMGB1P09429 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
HMGB1P09429 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
HMGB1P09429 POLI-202ENST00000406285 2030 ntTSL 2 BASIC23.28■■□□□ 1.32
HMGB1P09429 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms