Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SDC3O75056 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SDC3O75056 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SDC3O75056 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.34■□□□□ 0.69
SDC3O75056 DUT-205ENST00000558813 769 ntTSL 2 BASIC19.34■□□□□ 0.69
SDC3O75056 FITM1-202ENST00000559294 800 ntBASIC19.34■□□□□ 0.69
SDC3O75056 AL049597.2-201ENST00000565575 961 ntBASIC19.34■□□□□ 0.69
SDC3O75056 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
SDC3O75056 AC092865.7-201ENST00000641832 219 ntBASIC19.34■□□□□ 0.69
SDC3O75056 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SDC3O75056 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.34■□□□□ 0.69
SDC3O75056 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.34■□□□□ 0.69
SDC3O75056 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SDC3O75056 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.34■□□□□ 0.69
SDC3O75056 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
SDC3O75056 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SDC3O75056 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.33■□□□□ 0.69
SDC3O75056 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SDC3O75056 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC19.33■□□□□ 0.69
SDC3O75056 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.33■□□□□ 0.69
SDC3O75056 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.33■□□□□ 0.69
SDC3O75056 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
SDC3O75056 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SDC3O75056 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.33■□□□□ 0.68
SDC3O75056 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC19.33■□□□□ 0.68
SDC3O75056 C1QL1P1-201ENST00000568105 661 ntBASIC19.33■□□□□ 0.68
SDC3O75056 P4HB-223ENST00000576390 439 ntTSL 4 BASIC19.33■□□□□ 0.68
SDC3O75056 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC19.33■□□□□ 0.68
SDC3O75056 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SDC3O75056 AC010947.1-201ENST00000623454 693 ntBASIC19.33■□□□□ 0.68
SDC3O75056 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SDC3O75056 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
SDC3O75056 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.33■□□□□ 0.68
SDC3O75056 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
SDC3O75056 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SDC3O75056 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
SDC3O75056 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SDC3O75056 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SDC3O75056 KRT16P6-202ENST00000425692 1426 ntBASIC19.33■□□□□ 0.68
SDC3O75056 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC19.33■□□□□ 0.68
SDC3O75056 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
SDC3O75056 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SDC3O75056 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.33■□□□□ 0.68
SDC3O75056 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
SDC3O75056 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SDC3O75056 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SDC3O75056 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SDC3O75056 AC116351.2-201ENST00000606540 1585 ntBASIC19.32■□□□□ 0.68
SDC3O75056 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
SDC3O75056 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SDC3O75056 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
SDC3O75056 ARMC10P1-201ENST00000313754 855 ntBASIC19.32■□□□□ 0.68
SDC3O75056 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SDC3O75056 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.32■□□□□ 0.68
SDC3O75056 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC19.32■□□□□ 0.68
SDC3O75056 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC19.32■□□□□ 0.68
SDC3O75056 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SDC3O75056 AC018553.1-201ENST00000616682 1458 ntBASIC19.32■□□□□ 0.68
SDC3O75056 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
SDC3O75056 AC092720.2-201ENST00000602388 1665 ntBASIC19.32■□□□□ 0.68
SDC3O75056 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
SDC3O75056 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SDC3O75056 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SDC3O75056 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.32■□□□□ 0.68
SDC3O75056 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SDC3O75056 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
SDC3O75056 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
SDC3O75056 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SDC3O75056 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.31■□□□□ 0.68
SDC3O75056 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.31■□□□□ 0.68
SDC3O75056 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SDC3O75056 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
SDC3O75056 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SDC3O75056 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SDC3O75056 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SDC3O75056 AC113347.1-201ENST00000413321 391 ntBASIC19.31■□□□□ 0.68
SDC3O75056 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC19.31■□□□□ 0.68
SDC3O75056 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC19.31■□□□□ 0.68
SDC3O75056 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC19.31■□□□□ 0.68
SDC3O75056 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SDC3O75056 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC19.31■□□□□ 0.68
SDC3O75056 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.31■□□□□ 0.68
SDC3O75056 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC19.31■□□□□ 0.68
SDC3O75056 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC19.31■□□□□ 0.68
SDC3O75056 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC19.31■□□□□ 0.68
SDC3O75056 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC19.31■□□□□ 0.68
SDC3O75056 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SDC3O75056 AL031985.4-201ENST00000642138 673 ntBASIC19.31■□□□□ 0.68
SDC3O75056 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SDC3O75056 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.31■□□□□ 0.68
SDC3O75056 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SDC3O75056 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SDC3O75056 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.3■□□□□ 0.68
SDC3O75056 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SDC3O75056 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SDC3O75056 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC19.3■□□□□ 0.68
SDC3O75056 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC19.3■□□□□ 0.68
SDC3O75056 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC19.3■□□□□ 0.68
SDC3O75056 TMA16-209ENST00000513272 803 ntTSL 2 BASIC19.3■□□□□ 0.68
SDC3O75056 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms