Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC17.44■□□□□ 0.38
SGCEO43556 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SGCEO43556 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SGCEO43556 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SGCEO43556 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SGCEO43556 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SGCEO43556 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC17.44■□□□□ 0.38
SGCEO43556 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
SGCEO43556 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC17.44■□□□□ 0.38
SGCEO43556 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SGCEO43556 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC17.44■□□□□ 0.38
SGCEO43556 NME6-213ENST00000451657 871 ntTSL 2 BASIC17.44■□□□□ 0.38
SGCEO43556 SERP1-205ENST00000487153 657 ntTSL 4 BASIC17.44■□□□□ 0.38
SGCEO43556 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC17.44■□□□□ 0.38
SGCEO43556 AL109923.1-201ENST00000618799 583 ntBASIC17.44■□□□□ 0.38
SGCEO43556 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
SGCEO43556 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
SGCEO43556 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SGCEO43556 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SGCEO43556 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
SGCEO43556 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC17.44■□□□□ 0.38
SGCEO43556 MOK-225ENST00000522867 1883 ntTSL 5 BASIC17.44■□□□□ 0.38
SGCEO43556 GOLGA2P11-201ENST00000562660 1621 ntBASIC17.43■□□□□ 0.38
SGCEO43556 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SGCEO43556 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SGCEO43556 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SGCEO43556 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
SGCEO43556 CRK-204ENST00000574295 1391 ntTSL 5 BASIC17.43■□□□□ 0.38
SGCEO43556 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SGCEO43556 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC17.43■□□□□ 0.38
SGCEO43556 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC17.43■□□□□ 0.38
SGCEO43556 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SGCEO43556 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC17.43■□□□□ 0.38
SGCEO43556 MFF-205ENST00000354503 1085 ntTSL 2 BASIC17.43■□□□□ 0.38
SGCEO43556 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SGCEO43556 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SGCEO43556 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC17.43■□□□□ 0.38
SGCEO43556 AC091874.3-201ENST00000512672 1195 ntBASIC17.43■□□□□ 0.38
SGCEO43556 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
SGCEO43556 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SGCEO43556 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SGCEO43556 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SGCEO43556 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SGCEO43556 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SGCEO43556 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC17.43■□□□□ 0.38
SGCEO43556 AFG3L1P-217ENST00000557444 2447 ntBASIC17.42■□□□□ 0.38
SGCEO43556 MOK-233ENST00000524214 1539 ntTSL 2 BASIC17.42■□□□□ 0.38
SGCEO43556 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SGCEO43556 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SGCEO43556 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SGCEO43556 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC17.42■□□□□ 0.38
SGCEO43556 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC17.42■□□□□ 0.38
SGCEO43556 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
SGCEO43556 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SGCEO43556 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC17.42■□□□□ 0.38
SGCEO43556 PPP1R14BP2-201ENST00000426284 444 ntBASIC17.42■□□□□ 0.38
SGCEO43556 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC17.42■□□□□ 0.38
SGCEO43556 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
SGCEO43556 LBX2-AS1-202ENST00000603175 2083 ntBASIC17.42■□□□□ 0.38
SGCEO43556 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
SGCEO43556 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
SGCEO43556 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SGCEO43556 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
SGCEO43556 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.42■□□□□ 0.38
SGCEO43556 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
SGCEO43556 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SGCEO43556 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SGCEO43556 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
SGCEO43556 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
SGCEO43556 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SGCEO43556 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SGCEO43556 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SGCEO43556 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SGCEO43556 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SGCEO43556 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC17.41■□□□□ 0.38
SGCEO43556 BET1L-207ENST00000529614 560 ntTSL 5 BASIC17.41■□□□□ 0.38
SGCEO43556 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC17.41■□□□□ 0.38
SGCEO43556 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SGCEO43556 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC17.41■□□□□ 0.38
SGCEO43556 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SGCEO43556 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SGCEO43556 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SGCEO43556 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SGCEO43556 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SGCEO43556 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SGCEO43556 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SGCEO43556 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SGCEO43556 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC17.4■□□□□ 0.38
SGCEO43556 TMEM179-206ENST00000616017 1645 ntBASIC17.4■□□□□ 0.38
SGCEO43556 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SGCEO43556 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SGCEO43556 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SGCEO43556 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
SGCEO43556 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SGCEO43556 BID-204ENST00000399767 2129 ntTSL 2 BASIC17.4■□□□□ 0.38
SGCEO43556 AL390719.1-204ENST00000412397 1219 ntBASIC17.4■□□□□ 0.38
SGCEO43556 RHEB-204ENST00000472642 900 ntTSL 3 BASIC17.4■□□□□ 0.38
SGCEO43556 AC097658.1-201ENST00000475555 843 ntBASIC17.4■□□□□ 0.38
SGCEO43556 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC17.4■□□□□ 0.38
SGCEO43556 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms