Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC18.77■□□□□ 0.6
CACNA1AO00555 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC18.77■□□□□ 0.6
CACNA1AO00555 MPI-205ENST00000562606 1052 ntTSL 3 BASIC18.77■□□□□ 0.6
CACNA1AO00555 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC18.77■□□□□ 0.6
CACNA1AO00555 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
CACNA1AO00555 AC055717.3-201ENST00000622967 595 ntBASIC18.77■□□□□ 0.6
CACNA1AO00555 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC18.77■□□□□ 0.6
CACNA1AO00555 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CACNA1AO00555 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CACNA1AO00555 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.77■□□□□ 0.6
CACNA1AO00555 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CACNA1AO00555 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
CACNA1AO00555 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.77■□□□□ 0.6
CACNA1AO00555 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC18.77■□□□□ 0.6
CACNA1AO00555 GCSHP2-201ENST00000560971 527 ntBASIC18.77■□□□□ 0.6
CACNA1AO00555 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.6
CACNA1AO00555 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CACNA1AO00555 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
CACNA1AO00555 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CACNA1AO00555 CA15P1-201ENST00000481698 905 ntBASIC18.76■□□□□ 0.59
CACNA1AO00555 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.76■□□□□ 0.59
CACNA1AO00555 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC18.76■□□□□ 0.59
CACNA1AO00555 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CACNA1AO00555 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CACNA1AO00555 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CACNA1AO00555 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CACNA1AO00555 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC18.76■□□□□ 0.59
CACNA1AO00555 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CACNA1AO00555 BX276092.5-203ENST00000456199 560 ntBASIC18.76■□□□□ 0.59
CACNA1AO00555 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC18.76■□□□□ 0.59
CACNA1AO00555 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CACNA1AO00555 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CACNA1AO00555 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CACNA1AO00555 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC18.76■□□□□ 0.59
CACNA1AO00555 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CACNA1AO00555 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.75■□□□□ 0.59
CACNA1AO00555 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC18.75■□□□□ 0.59
CACNA1AO00555 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CACNA1AO00555 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CACNA1AO00555 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC18.75■□□□□ 0.59
CACNA1AO00555 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
CACNA1AO00555 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CACNA1AO00555 PMS2P7-201ENST00000506558 1336 ntBASIC18.75■□□□□ 0.59
CACNA1AO00555 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CACNA1AO00555 PGAM5P1-201ENST00000518923 814 ntBASIC18.75■□□□□ 0.59
CACNA1AO00555 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CACNA1AO00555 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
CACNA1AO00555 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC18.75■□□□□ 0.59
CACNA1AO00555 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
CACNA1AO00555 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC18.75■□□□□ 0.59
CACNA1AO00555 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.74■□□□□ 0.59
CACNA1AO00555 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
CACNA1AO00555 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
CACNA1AO00555 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CACNA1AO00555 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.74■□□□□ 0.59
CACNA1AO00555 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
CACNA1AO00555 TLE1-202ENST00000376484 666 ntTSL 3 BASIC18.74■□□□□ 0.59
CACNA1AO00555 FABP5-202ENST00000396359 986 ntTSL 5 BASIC18.74■□□□□ 0.59
CACNA1AO00555 LINC01124-201ENST00000409786 2117 ntBASIC18.74■□□□□ 0.59
CACNA1AO00555 CIB2-208ENST00000560618 804 ntTSL 2 BASIC18.74■□□□□ 0.59
CACNA1AO00555 AL773604.1-201ENST00000617417 272 ntBASIC18.74■□□□□ 0.59
CACNA1AO00555 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC18.74■□□□□ 0.59
CACNA1AO00555 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
CACNA1AO00555 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC18.74■□□□□ 0.59
CACNA1AO00555 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CACNA1AO00555 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.73■□□□□ 0.59
CACNA1AO00555 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CACNA1AO00555 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.73■□□□□ 0.59
CACNA1AO00555 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.73■□□□□ 0.59
CACNA1AO00555 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CACNA1AO00555 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CACNA1AO00555 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CACNA1AO00555 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
CACNA1AO00555 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.73■□□□□ 0.59
CACNA1AO00555 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CACNA1AO00555 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CACNA1AO00555 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CACNA1AO00555 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
CACNA1AO00555 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.73■□□□□ 0.59
CACNA1AO00555 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CACNA1AO00555 PTBP1P-201ENST00000554374 1601 ntBASIC18.73■□□□□ 0.59
CACNA1AO00555 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.73■□□□□ 0.59
CACNA1AO00555 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18.72■□□□□ 0.59
CACNA1AO00555 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CACNA1AO00555 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CACNA1AO00555 Z85996.1-201ENST00000494644 937 ntBASIC18.72■□□□□ 0.59
CACNA1AO00555 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
CACNA1AO00555 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.72■□□□□ 0.59
CACNA1AO00555 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.72■□□□□ 0.59
CACNA1AO00555 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
CACNA1AO00555 AL121772.3-201ENST00000610840 674 ntBASIC18.72■□□□□ 0.59
CACNA1AO00555 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC18.72■□□□□ 0.59
CACNA1AO00555 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CACNA1AO00555 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CACNA1AO00555 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CACNA1AO00555 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CACNA1AO00555 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC18.72■□□□□ 0.59
CACNA1AO00555 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
CACNA1AO00555 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CACNA1AO00555 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms