Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC188H7C350 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
CCDC188H7C350 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC188H7C350 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC188H7C350 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC188H7C350 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC188H7C350 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC188H7C350 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC20.54■□□□□ 0.88
CCDC188H7C350 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
CCDC188H7C350 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC188H7C350 AC120498.9-201ENST00000339021 3867 ntBASIC20.54■□□□□ 0.88
CCDC188H7C350 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC188H7C350 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC188H7C350 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CCDC188H7C350 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC188H7C350 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC188H7C350 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC188H7C350 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC188H7C350 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC188H7C350 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC188H7C350 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC188H7C350 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
CCDC188H7C350 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC188H7C350 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC188H7C350 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC188H7C350 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC188H7C350 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC188H7C350 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC188H7C350 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC188H7C350 TERF1P5-201ENST00000477545 1207 ntBASIC20.53■□□□□ 0.88
CCDC188H7C350 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.53■□□□□ 0.88
CCDC188H7C350 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.53■□□□□ 0.88
CCDC188H7C350 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.53■□□□□ 0.88
CCDC188H7C350 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
CCDC188H7C350 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC188H7C350 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.53■□□□□ 0.88
CCDC188H7C350 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC188H7C350 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CCDC188H7C350 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.53■□□□□ 0.88
CCDC188H7C350 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC188H7C350 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC188H7C350 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC188H7C350 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
CCDC188H7C350 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC188H7C350 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC188H7C350 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC188H7C350 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
CCDC188H7C350 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
CCDC188H7C350 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
CCDC188H7C350 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC188H7C350 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC20.52■□□□□ 0.88
CCDC188H7C350 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC188H7C350 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.52■□□□□ 0.88
CCDC188H7C350 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
CCDC188H7C350 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.52■□□□□ 0.88
CCDC188H7C350 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
CCDC188H7C350 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.52■□□□□ 0.88
CCDC188H7C350 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC20.52■□□□□ 0.88
CCDC188H7C350 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC188H7C350 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC188H7C350 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.52■□□□□ 0.88
CCDC188H7C350 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC20.52■□□□□ 0.88
CCDC188H7C350 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC20.52■□□□□ 0.88
CCDC188H7C350 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC188H7C350 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC188H7C350 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC188H7C350 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC188H7C350 PHGDH-210ENST00000641115 1638 ntBASIC20.52■□□□□ 0.88
CCDC188H7C350 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC188H7C350 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
CCDC188H7C350 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CCDC188H7C350 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC188H7C350 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC20.51■□□□□ 0.87
CCDC188H7C350 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC20.51■□□□□ 0.87
CCDC188H7C350 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC20.51■□□□□ 0.87
CCDC188H7C350 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC188H7C350 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC188H7C350 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC188H7C350 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
CCDC188H7C350 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC188H7C350 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC188H7C350 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC188H7C350 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC188H7C350 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC188H7C350 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC188H7C350 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC188H7C350 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC188H7C350 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC188H7C350 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC188H7C350 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.5■□□□□ 0.87
CCDC188H7C350 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC188H7C350 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20.5■□□□□ 0.87
CCDC188H7C350 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.5■□□□□ 0.87
CCDC188H7C350 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC188H7C350 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC188H7C350 PARP1-202ENST00000366792 553 ntTSL 3 BASIC20.5■□□□□ 0.87
CCDC188H7C350 HLA-G-202ENST00000376815 851 ntBASIC20.5■□□□□ 0.87
CCDC188H7C350 HLA-G-203ENST00000376818 1127 ntBASIC20.5■□□□□ 0.87
CCDC188H7C350 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC188H7C350 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms