Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC21.29■■□□□ 1
LRRC53A6NM62 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC21.29■■□□□ 1
LRRC53A6NM62 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC21.29■■□□□ 1
LRRC53A6NM62 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LRRC53A6NM62 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC21.29■■□□□ 1
LRRC53A6NM62 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
LRRC53A6NM62 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.29■■□□□ 1
LRRC53A6NM62 AL512625.2-201ENST00000417533 625 ntBASIC21.29■■□□□ 1
LRRC53A6NM62 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.29■■□□□ 1
LRRC53A6NM62 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC21.29■■□□□ 1
LRRC53A6NM62 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC21.29■■□□□ 1
LRRC53A6NM62 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC21.29■■□□□ 1
LRRC53A6NM62 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
LRRC53A6NM62 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC21.29■■□□□ 1
LRRC53A6NM62 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC21.29■■□□□ 1
LRRC53A6NM62 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC21.29■■□□□ 1
LRRC53A6NM62 AC005181.1-201ENST00000604782 1256 ntBASIC21.29■■□□□ 1
LRRC53A6NM62 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
LRRC53A6NM62 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
LRRC53A6NM62 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LRRC53A6NM62 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LRRC53A6NM62 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
LRRC53A6NM62 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC21.29■■□□□ 1
LRRC53A6NM62 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LRRC53A6NM62 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
LRRC53A6NM62 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC21.28■■□□□ 1
LRRC53A6NM62 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC21.28■■□□□ 1
LRRC53A6NM62 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LRRC53A6NM62 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LRRC53A6NM62 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LRRC53A6NM62 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LRRC53A6NM62 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC21.28■■□□□ 1
LRRC53A6NM62 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LRRC53A6NM62 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC21.28■■□□□ 1
LRRC53A6NM62 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC21.28■■□□□ 1
LRRC53A6NM62 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LRRC53A6NM62 AC022517.1-201ENST00000592429 346 ntBASIC21.28■■□□□ 1
LRRC53A6NM62 MIR5787-201ENST00000611784 55 ntBASIC21.28■■□□□ 1
LRRC53A6NM62 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC21.28■■□□□ 1
LRRC53A6NM62 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC21.28■■□□□ 1
LRRC53A6NM62 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC21.28■■□□□ 1
LRRC53A6NM62 AL032819.2-201ENST00000624543 2162 ntBASIC21.28■■□□□ 1
LRRC53A6NM62 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LRRC53A6NM62 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC21.28■■□□□ 1
LRRC53A6NM62 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC21.28■■□□□ 1
LRRC53A6NM62 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
LRRC53A6NM62 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
LRRC53A6NM62 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC21.28■■□□□ 1
LRRC53A6NM62 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC21.28■■□□□ 1
LRRC53A6NM62 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC21.27■■□□□ 1
LRRC53A6NM62 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC21.27■■□□□ 1
LRRC53A6NM62 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
LRRC53A6NM62 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LRRC53A6NM62 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LRRC53A6NM62 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC21.27■■□□□ 1
LRRC53A6NM62 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.27■■□□□ 1
LRRC53A6NM62 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LRRC53A6NM62 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
LRRC53A6NM62 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC21.27■■□□□ 1
LRRC53A6NM62 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LRRC53A6NM62 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LRRC53A6NM62 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC21.27■■□□□ 1
LRRC53A6NM62 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
LRRC53A6NM62 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC21.27■■□□□ 1
LRRC53A6NM62 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC21.27■□□□□ 0.99
LRRC53A6NM62 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
LRRC53A6NM62 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC21.27■□□□□ 0.99
LRRC53A6NM62 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC21.27■□□□□ 0.99
LRRC53A6NM62 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC21.27■□□□□ 0.99
LRRC53A6NM62 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC21.26■□□□□ 0.99
LRRC53A6NM62 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC53A6NM62 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC53A6NM62 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC53A6NM62 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC21.26■□□□□ 0.99
LRRC53A6NM62 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC53A6NM62 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC53A6NM62 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC53A6NM62 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC21.26■□□□□ 0.99
LRRC53A6NM62 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC21.26■□□□□ 0.99
LRRC53A6NM62 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC53A6NM62 METTL26-203ENST00000397664 604 ntTSL 2 BASIC21.26■□□□□ 0.99
LRRC53A6NM62 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC53A6NM62 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC53A6NM62 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC21.26■□□□□ 0.99
LRRC53A6NM62 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC21.26■□□□□ 0.99
LRRC53A6NM62 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC53A6NM62 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC53A6NM62 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC53A6NM62 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC53A6NM62 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
LRRC53A6NM62 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
LRRC53A6NM62 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC53A6NM62 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC53A6NM62 NXN-202ENST00000537628 1340 ntTSL 3 BASIC21.26■□□□□ 0.99
LRRC53A6NM62 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC53A6NM62 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC21.26■□□□□ 0.99
LRRC53A6NM62 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC53A6NM62 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC21.25■□□□□ 0.99
LRRC53A6NM62 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC21.25■□□□□ 0.99
LRRC53A6NM62 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms