Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 ADTRP-203ENST00000414691 2058 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 PLCH1-206ENST00000494598 3525 ntTSL 5 BASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 CCR2-204ENST00000445132 2386 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 EGFEM1P-205ENST00000483846 2327 ntTSL 5 BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 AC107067.1-201ENST00000500009 1654 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 AC010624.4-201ENST00000597606 1351 ntBASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 NEK2P2-201ENST00000438441 1338 ntBASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 RN7SKP144-201ENST00000411108 279 ntBASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 AC013268.2-201ENST00000420753 337 ntBASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 LINC00390-201ENST00000432331 340 ntTSL 5 BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 ATP5LP2-201ENST00000440646 311 ntBASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 ACA64.1-201ENST00000459171 127 ntBASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 AC023818.1-201ENST00000498379 384 ntBASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 SNORA58-201ENST00000505219 137 ntBASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 AC025458.1-201ENST00000506046 166 ntBASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 AC138409.2-202ENST00000507274 458 ntBASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 GOLGA5P1-201ENST00000507317 980 ntBASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 AC131182.1-201ENST00000509184 657 ntTSL 3 BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 LDHAP1-201ENST00000509421 992 ntBASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 AC106800.3-201ENST00000511389 308 ntBASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 MIR5095-201ENST00000578844 88 ntBASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 AP005136.2-201ENST00000583253 1049 ntBASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 FO681491.1-202ENST00000623392 737 ntBASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 RASGEF1B-214ENST00000638048 2386 ntTSL 5 BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 GABRR1-206ENST00000611484 3259 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
HDDC3Q8N4P3 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 AC012078.1-201ENST00000405035 1646 ntBASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 OSBPL6-207ENST00000409631 3273 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 FO082842.1-201ENST00000423552 1370 ntBASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 AC008957.3-201ENST00000624112 2242 ntBASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 CIR1P2-201ENST00000514821 1342 ntBASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 CLEC2D-202ENST00000261340 935 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 BRWD1P3-201ENST00000428816 390 ntBASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 RPL23AP19-201ENST00000436229 369 ntBASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 NPM1P19-201ENST00000450070 712 ntBASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 FAM107B-217ENST00000478076 790 ntAPPRIS P1 TSL 4 BASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 RPS4XP14-201ENST00000493072 781 ntBASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 AC006499.4-201ENST00000510947 694 ntBASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 AC027308.1-201ENST00000517993 110 ntBASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 AC060775.1-201ENST00000518241 520 ntBASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 AC018607.1-201ENST00000518552 673 ntTSL 5 BASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 IGKV1D-22-201ENST00000518953 324 ntBASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 AC092332.1-201ENST00000563684 829 ntBASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 AL080312.2-201ENST00000613001 630 ntBASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 PSMD10P2-203ENST00000627340 914 ntTSL 5 BASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 MOB4-201ENST00000233892 3785 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 AC100858.3-201ENST00000533516 1605 ntTSL 5 BASIC6.36□□□□□ -1.39
HDDC3Q8N4P3 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 CYP2G2P-201ENST00000594920 1485 ntBASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC6.35□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms