Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC6.42□□□□□ -1.38
COL4A4P53420 RPSAP73-201ENST00000614820 330 ntBASIC6.42□□□□□ -1.38
COL4A4P53420 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC6.42□□□□□ -1.38
COL4A4P53420 AL596275.2-208ENST00000641192 594 ntBASIC6.42□□□□□ -1.38
COL4A4P53420 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL4A4P53420 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL4A4P53420 TMTC1-201ENST00000256062 8805 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL4A4P53420 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC6.42□□□□□ -1.38
COL4A4P53420 LINC01814-202ENST00000454224 8839 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL4A4P53420 AL161756.3-201ENST00000641216 2071 ntBASIC6.42□□□□□ -1.38
COL4A4P53420 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL4A4P53420 AC006511.3-201ENST00000624929 1783 ntBASIC6.42□□□□□ -1.38
COL4A4P53420 MAPK10-338ENST00000641647 3362 ntBASIC6.42□□□□□ -1.38
COL4A4P53420 CD109-203ENST00000437994 9401 ntAPPRIS ALT1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL4A4P53420 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
COL4A4P53420 MYPN-205ENST00000613327 6116 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL4A4P53420 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
COL4A4P53420 OR2W4P-201ENST00000406496 926 ntBASIC6.42□□□□□ -1.38
COL4A4P53420 AC007568.1-201ENST00000422912 471 ntBASIC6.42□□□□□ -1.38
COL4A4P53420 SEPT14P12-201ENST00000442280 560 ntBASIC6.42□□□□□ -1.38
COL4A4P53420 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC6.42□□□□□ -1.38
COL4A4P53420 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC6.42□□□□□ -1.38
COL4A4P53420 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC6.42□□□□□ -1.38
COL4A4P53420 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC6.42□□□□□ -1.38
COL4A4P53420 AC091685.2-201ENST00000454924 864 ntBASIC6.42□□□□□ -1.38
COL4A4P53420 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC6.42□□□□□ -1.38
COL4A4P53420 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC6.42□□□□□ -1.38
COL4A4P53420 AC010343.2-201ENST00000510162 224 ntBASIC6.42□□□□□ -1.38
COL4A4P53420 MIR4505-201ENST00000582238 73 ntBASIC6.42□□□□□ -1.38
COL4A4P53420 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC6.42□□□□□ -1.38
COL4A4P53420 AC005244.1-201ENST00000582566 339 ntBASIC6.42□□□□□ -1.38
COL4A4P53420 CCL14-204ENST00000622526 472 ntTSL 3 BASIC6.42□□□□□ -1.38
COL4A4P53420 AC004836.1-201ENST00000623032 634 ntBASIC6.42□□□□□ -1.38
COL4A4P53420 TEP1-201ENST00000262715 10695 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL4A4P53420 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL4A4P53420 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
COL4A4P53420 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
COL4A4P53420 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL4A4P53420 NUMB-223ENST00000556772 5172 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL4A4P53420 USF3-201ENST00000316407 13708 ntAPPRIS P2 TSL 5 BASIC6.41□□□□□ -1.38
COL4A4P53420 ERCC4-201ENST00000311895 6758 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL4A4P53420 CLASP1-208ENST00000455322 5660 ntTSL 5 BASIC6.41□□□□□ -1.38
COL4A4P53420 AC068490.1-202ENST00000637384 3185 ntTSL 5 BASIC6.41□□□□□ -1.38
COL4A4P53420 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC6.41□□□□□ -1.38
COL4A4P53420 LDB2-216ENST00000515064 2295 ntAPPRIS ALT1 TSL 2 BASIC6.41□□□□□ -1.38
COL4A4P53420 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC6.41□□□□□ -1.38
COL4A4P53420 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL4A4P53420 RN7SKP77-201ENST00000363261 353 ntBASIC6.41□□□□□ -1.38
COL4A4P53420 RNA5SP507-201ENST00000363603 121 ntBASIC6.41□□□□□ -1.38
COL4A4P53420 RNA5SP478-201ENST00000364657 115 ntBASIC6.41□□□□□ -1.38
COL4A4P53420 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC6.41□□□□□ -1.38
COL4A4P53420 AC012075.1-201ENST00000436549 580 ntBASIC6.41□□□□□ -1.38
COL4A4P53420 AL390119.1-201ENST00000440329 312 ntBASIC6.41□□□□□ -1.38
COL4A4P53420 RPL23AP60-201ENST00000450011 454 ntBASIC6.41□□□□□ -1.38
COL4A4P53420 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC6.41□□□□□ -1.38
COL4A4P53420 AC074087.1-201ENST00000512059 724 ntBASIC6.41□□□□□ -1.38
COL4A4P53420 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC6.41□□□□□ -1.38
COL4A4P53420 MINCR-206ENST00000524335 499 ntTSL 2 BASIC6.41□□□□□ -1.38
COL4A4P53420 EIF4A2P5-201ENST00000529914 499 ntBASIC6.41□□□□□ -1.38
COL4A4P53420 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC6.41□□□□□ -1.38
COL4A4P53420 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC6.41□□□□□ -1.38
COL4A4P53420 OR7A1P-201ENST00000601206 970 ntBASIC6.41□□□□□ -1.38
COL4A4P53420 AC096861.1-201ENST00000616652 240 ntBASIC6.41□□□□□ -1.38
COL4A4P53420 HOTTIP_3.1-201ENST00000619957 337 ntBASIC6.41□□□□□ -1.38
COL4A4P53420 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC6.41□□□□□ -1.38
COL4A4P53420 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC6.41□□□□□ -1.38
COL4A4P53420 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC6.41□□□□□ -1.38
COL4A4P53420 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL4A4P53420 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL4A4P53420 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC6.41□□□□□ -1.38
COL4A4P53420 UBA2-202ENST00000439527 2802 ntTSL 2 BASIC6.41□□□□□ -1.38
COL4A4P53420 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC6.41□□□□□ -1.38
COL4A4P53420 EZH1-201ENST00000415827 4608 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL4A4P53420 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
COL4A4P53420 LNPEP-201ENST00000231368 12752 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL4A4P53420 MLLT3-203ENST00000380338 6772 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL4A4P53420 TRPM3-204ENST00000360823 5966 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.38
COL4A4P53420 EYA3-208ENST00000540618 5885 ntTSL 2 BASIC6.4□□□□□ -1.38
COL4A4P53420 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL4A4P53420 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL4A4P53420 DPY19L1P1-201ENST00000417811 2594 ntBASIC6.4□□□□□ -1.38
COL4A4P53420 KCNMB2-204ENST00000432997 2552 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL4A4P53420 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL4A4P53420 CACNB4-225ENST00000636442 4232 ntTSL 5 BASIC6.4□□□□□ -1.38
COL4A4P53420 HMGA1P8-201ENST00000414130 321 ntBASIC6.4□□□□□ -1.38
COL4A4P53420 AC113412.1-201ENST00000425840 504 ntBASIC6.4□□□□□ -1.38
COL4A4P53420 AL139148.1-201ENST00000427122 680 ntBASIC6.4□□□□□ -1.38
COL4A4P53420 FABP7P2-201ENST00000429946 379 ntBASIC6.4□□□□□ -1.38
COL4A4P53420 GAPDHP58-201ENST00000438477 1006 ntBASIC6.4□□□□□ -1.38
COL4A4P53420 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC6.4□□□□□ -1.38
COL4A4P53420 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC6.4□□□□□ -1.38
COL4A4P53420 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC6.4□□□□□ -1.38
COL4A4P53420 AP001496.3-201ENST00000580230 913 ntBASIC6.4□□□□□ -1.38
COL4A4P53420 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC6.4□□□□□ -1.38
COL4A4P53420 AC027334.1-201ENST00000603257 310 ntBASIC6.4□□□□□ -1.38
COL4A4P53420 FO393422.1-201ENST00000603908 708 ntBASIC6.4□□□□□ -1.38
COL4A4P53420 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
COL4A4P53420 AC087565.3-203ENST00000641018 837 ntBASIC6.4□□□□□ -1.38
COL4A4P53420 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL4A4P53420 NCKAP1L-201ENST00000293373 9016 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms