Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC093166.3-201ENST00000448785 303 ntBASIC7.28□□□□□ -1.24
SMARCA1P28370 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC7.28□□□□□ -1.24
SMARCA1P28370 RN7SL649P-201ENST00000496974 275 ntBASIC7.28□□□□□ -1.24
SMARCA1P28370 AC023818.1-201ENST00000498379 384 ntBASIC7.28□□□□□ -1.24
SMARCA1P28370 AC113367.2-201ENST00000505749 160 ntBASIC7.28□□□□□ -1.24
SMARCA1P28370 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC7.28□□□□□ -1.24
SMARCA1P28370 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC7.28□□□□□ -1.24
SMARCA1P28370 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC7.28□□□□□ -1.24
SMARCA1P28370 AC024405.1-201ENST00000532521 1042 ntBASIC7.28□□□□□ -1.24
SMARCA1P28370 AP001858.2-201ENST00000536213 601 ntBASIC7.28□□□□□ -1.24
SMARCA1P28370 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
SMARCA1P28370 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC7.28□□□□□ -1.24
SMARCA1P28370 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC7.28□□□□□ -1.24
SMARCA1P28370 DYNLL1P1-201ENST00000595442 269 ntBASIC7.28□□□□□ -1.24
SMARCA1P28370 AP000654.1-201ENST00000602510 1192 ntTSL 5 BASIC7.28□□□□□ -1.24
SMARCA1P28370 AC006924.1-201ENST00000610750 559 ntBASIC7.28□□□□□ -1.24
SMARCA1P28370 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC7.28□□□□□ -1.24
SMARCA1P28370 AL080312.2-201ENST00000613001 630 ntBASIC7.28□□□□□ -1.24
SMARCA1P28370 Xist_exon4.1-201ENST00000615964 126 ntBASIC7.28□□□□□ -1.24
SMARCA1P28370 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
SMARCA1P28370 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC7.28□□□□□ -1.24
SMARCA1P28370 WBP11P1-201ENST00000562560 1931 ntBASIC7.28□□□□□ -1.24
SMARCA1P28370 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC7.28□□□□□ -1.24
SMARCA1P28370 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC7.28□□□□□ -1.24
SMARCA1P28370 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC7.28□□□□□ -1.24
SMARCA1P28370 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC7.28□□□□□ -1.24
SMARCA1P28370 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
SMARCA1P28370 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
SMARCA1P28370 DHRS9-204ENST00000428522 1678 ntAPPRIS P1 TSL 5 BASIC7.28□□□□□ -1.24
SMARCA1P28370 AL137058.3-201ENST00000624531 3099 ntBASIC7.28□□□□□ -1.24
SMARCA1P28370 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
SMARCA1P28370 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
SMARCA1P28370 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
SMARCA1P28370 ST6GAL1-211ENST00000448044 4302 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
SMARCA1P28370 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC7.27□□□□□ -1.24
SMARCA1P28370 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC7.27□□□□□ -1.24
SMARCA1P28370 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC7.27□□□□□ -1.24
SMARCA1P28370 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC7.27□□□□□ -1.24
SMARCA1P28370 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC7.27□□□□□ -1.24
SMARCA1P28370 FTO-203ENST00000460382 1517 ntTSL 5 BASIC7.27□□□□□ -1.25
SMARCA1P28370 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
SMARCA1P28370 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC7.27□□□□□ -1.25
SMARCA1P28370 ERMARD-202ENST00000366772 2003 ntTSL 5 BASIC7.27□□□□□ -1.25
SMARCA1P28370 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
SMARCA1P28370 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC7.27□□□□□ -1.25
SMARCA1P28370 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC7.27□□□□□ -1.25
SMARCA1P28370 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC7.27□□□□□ -1.25
SMARCA1P28370 RNU1-49P-201ENST00000363468 159 ntBASIC7.27□□□□□ -1.25
SMARCA1P28370 RNA5SP346-201ENST00000363541 121 ntBASIC7.27□□□□□ -1.25
SMARCA1P28370 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC7.27□□□□□ -1.25
SMARCA1P28370 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC7.27□□□□□ -1.25
SMARCA1P28370 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC7.27□□□□□ -1.25
SMARCA1P28370 RN7SKP108-201ENST00000411367 328 ntBASIC7.27□□□□□ -1.25
SMARCA1P28370 KIF4CP-201ENST00000422742 1279 ntBASIC7.27□□□□□ -1.25
SMARCA1P28370 PLA2G12AP2-201ENST00000424744 264 ntBASIC7.27□□□□□ -1.25
SMARCA1P28370 AC092865.3-201ENST00000425390 1026 ntBASIC7.27□□□□□ -1.25
SMARCA1P28370 RPSAP65-201ENST00000429660 595 ntBASIC7.27□□□□□ -1.25
SMARCA1P28370 PPIAP10-201ENST00000438675 458 ntBASIC7.27□□□□□ -1.25
SMARCA1P28370 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC7.27□□□□□ -1.25
SMARCA1P28370 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC7.27□□□□□ -1.25
SMARCA1P28370 AC092967.1-201ENST00000449016 481 ntBASIC7.27□□□□□ -1.25
SMARCA1P28370 HIGD1AP16-201ENST00000450986 258 ntBASIC7.27□□□□□ -1.25
SMARCA1P28370 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC7.27□□□□□ -1.25
SMARCA1P28370 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC7.27□□□□□ -1.25
SMARCA1P28370 AC112484.3-201ENST00000505910 329 ntBASIC7.27□□□□□ -1.25
SMARCA1P28370 SNX18P25-201ENST00000510539 758 ntBASIC7.27□□□□□ -1.25
SMARCA1P28370 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC7.27□□□□□ -1.25
SMARCA1P28370 AC027117.1-201ENST00000520646 667 ntTSL 5 BASIC7.27□□□□□ -1.25
SMARCA1P28370 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC7.27□□□□□ -1.25
SMARCA1P28370 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC7.27□□□□□ -1.25
SMARCA1P28370 RPA2P3-201ENST00000533268 770 ntBASIC7.27□□□□□ -1.25
SMARCA1P28370 AC027667.1-201ENST00000545814 304 ntBASIC7.27□□□□□ -1.25
SMARCA1P28370 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
SMARCA1P28370 AC107958.1-201ENST00000556576 290 ntBASIC7.27□□□□□ -1.25
SMARCA1P28370 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC7.27□□□□□ -1.25
SMARCA1P28370 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC7.27□□□□□ -1.25
SMARCA1P28370 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC7.27□□□□□ -1.25
SMARCA1P28370 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC7.27□□□□□ -1.25
SMARCA1P28370 AL591167.1-201ENST00000607321 456 ntBASIC7.27□□□□□ -1.25
SMARCA1P28370 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC7.27□□□□□ -1.25
SMARCA1P28370 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC7.27□□□□□ -1.25
SMARCA1P28370 AC008833.1-201ENST00000611633 691 ntBASIC7.27□□□□□ -1.25
SMARCA1P28370 MIR6721-201ENST00000617181 87 ntBASIC7.27□□□□□ -1.25
SMARCA1P28370 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC7.27□□□□□ -1.25
SMARCA1P28370 MTND4P21-201ENST00000453886 1357 ntBASIC7.27□□□□□ -1.25
SMARCA1P28370 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
SMARCA1P28370 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
SMARCA1P28370 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
SMARCA1P28370 AC092692.1-201ENST00000623625 2595 ntBASIC7.27□□□□□ -1.25
SMARCA1P28370 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC7.27□□□□□ -1.25
SMARCA1P28370 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC7.27□□□□□ -1.25
SMARCA1P28370 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC7.27□□□□□ -1.25
SMARCA1P28370 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC7.27□□□□□ -1.25
SMARCA1P28370 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC7.27□□□□□ -1.25
SMARCA1P28370 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC7.27□□□□□ -1.25
SMARCA1P28370 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC7.27□□□□□ -1.25
SMARCA1P28370 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC7.27□□□□□ -1.25
SMARCA1P28370 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC7.27□□□□□ -1.25
SMARCA1P28370 ERG-202ENST00000398897 4651 ntTSL 5 BASIC7.27□□□□□ -1.25
SMARCA1P28370 BIN2P1-201ENST00000504996 1530 ntBASIC7.27□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 129.8 ms