Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 CLDN2-201ENST00000336803 2959 ntAPPRIS P1 TSL 2 BASIC7.09□□□□□ -1.27
COL8A1P27658 MCM3-205ENST00000596288 3169 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
COL8A1P27658 CPEB4-201ENST00000265085 9483 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL8A1P27658 MAGEE1-201ENST00000361470 3630 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
COL8A1P27658 AL021396.1-202ENST00000457707 1929 ntTSL 2 BASIC7.09□□□□□ -1.27
COL8A1P27658 LINC02072-201ENST00000441895 2645 ntTSL 2 BASIC7.09□□□□□ -1.27
COL8A1P27658 FAT1-212ENST00000614102 14758 ntAPPRIS ALT1 TSL 5 BASIC7.09□□□□□ -1.28
COL8A1P27658 HSD11B1-202ENST00000367027 1405 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.28
COL8A1P27658 TCF4-226ENST00000565018 2357 ntTSL 5 BASIC7.09□□□□□ -1.28
COL8A1P27658 Z97832.2-201ENST00000605896 4261 ntBASIC7.09□□□□□ -1.28
COL8A1P27658 AC010680.2-201ENST00000603521 2117 ntBASIC7.09□□□□□ -1.28
COL8A1P27658 KCNMB3-205ENST00000485523 7246 ntTSL 1 (best) BASIC7.09□□□□□ -1.28
COL8A1P27658 ZNF430-203ENST00000595401 3021 ntTSL 2 BASIC7.09□□□□□ -1.28
COL8A1P27658 SCMH1-205ENST00000372595 3231 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
COL8A1P27658 BRDT-204ENST00000394530 3207 ntTSL 2 BASIC7.08□□□□□ -1.28
COL8A1P27658 OGDH-210ENST00000631326 4116 ntTSL 5 BASIC7.08□□□□□ -1.28
COL8A1P27658 SLC8A1-204ENST00000405269 2965 ntTSL 5 BASIC7.08□□□□□ -1.28
COL8A1P27658 ATG13-201ENST00000359513 4348 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
COL8A1P27658 BUB1B-202ENST00000412359 3628 ntTSL 2 BASIC7.08□□□□□ -1.28
COL8A1P27658 IKZF2-202ENST00000374319 2001 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
COL8A1P27658 NIM1K-204ENST00000512796 2929 ntAPPRIS P1 TSL 2 BASIC7.08□□□□□ -1.28
COL8A1P27658 ENY2-211ENST00000521688 2922 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
COL8A1P27658 SIPA1L1-211ENST00000555818 7831 ntAPPRIS P3 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL8A1P27658 KIAA0391-205ENST00000603544 2232 ntTSL 5 BASIC7.08□□□□□ -1.28
COL8A1P27658 GPBP1-208ENST00000514387 3310 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL8A1P27658 MED1-202ENST00000394287 2870 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
COL8A1P27658 SKAP2-201ENST00000345317 3998 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL8A1P27658 ZNF484-203ENST00000395505 3960 ntAPPRIS ALT2 TSL 2 BASIC7.08□□□□□ -1.28
COL8A1P27658 GC-201ENST00000273951 1972 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL8A1P27658 AC104806.2-201ENST00000502400 1991 ntTSL 2 BASIC7.08□□□□□ -1.28
COL8A1P27658 ZHX3-201ENST00000309060 10030 ntAPPRIS P1 TSL 5 BASIC7.08□□□□□ -1.28
COL8A1P27658 MR1-205ENST00000434571 7479 ntTSL 5 BASIC7.08□□□□□ -1.28
COL8A1P27658 CASR-205ENST00000639785 10047 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL8A1P27658 OR4A16-201ENST00000314721 1081 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
COL8A1P27658 OR1J2-201ENST00000335302 942 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
COL8A1P27658 Y_RNA.58-201ENST00000362807 102 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 Y_RNA.154-201ENST00000363624 102 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 RNY3P1-201ENST00000365085 102 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 RNY3-201ENST00000365484 102 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 RNU6-784P-201ENST00000384330 106 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 Y_RNA.490-201ENST00000384413 102 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
COL8A1P27658 MTCO3P40-201ENST00000392516 676 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 OR4K12P-201ENST00000406538 961 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 AL137784.1-201ENST00000407121 745 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 AP000357.1-201ENST00000409926 1165 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 LSM5-205ENST00000409952 687 ntTSL 4 BASIC7.08□□□□□ -1.28
COL8A1P27658 RPL35AP24-201ENST00000413846 330 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 RPL23AP39-201ENST00000415533 405 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 PPIAP23-201ENST00000420099 497 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 PGAM1P3-201ENST00000420790 565 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 PNRC2P1-201ENST00000423940 420 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 AC007742.1-201ENST00000425789 329 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 AL035410.1-201ENST00000427409 427 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 RPL12P4-201ENST00000432629 497 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 ELOCP26-201ENST00000436067 329 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 IGKV6D-21-201ENST00000436451 409 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
COL8A1P27658 AL359502.1-201ENST00000437334 692 ntTSL 3 BASIC7.08□□□□□ -1.28
COL8A1P27658 AL451164.3-201ENST00000441377 447 ntTSL 5 BASIC7.08□□□□□ -1.28
COL8A1P27658 ARMC8P1-201ENST00000443069 1289 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 RPL31P20-201ENST00000449593 360 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 KDM4A-AS1-205ENST00000453015 647 ntTSL 2 BASIC7.08□□□□□ -1.28
COL8A1P27658 AC005515.1-201ENST00000456368 289 ntTSL 3 BASIC7.08□□□□□ -1.28
COL8A1P27658 RPS4XP19-201ENST00000460237 736 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 NDUFB4P1-201ENST00000462398 381 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 AC130509.1-201ENST00000464158 433 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 RN7SL414P-201ENST00000469545 294 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 VAMP3-202ENST00000470357 954 ntTSL 3 BASIC7.08□□□□□ -1.28
COL8A1P27658 SSU72P8-201ENST00000473520 585 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
COL8A1P27658 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL8A1P27658 AC084017.1-201ENST00000483240 860 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 RPL12P32-201ENST00000484010 494 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 PAQR9-AS1-202ENST00000493825 576 ntTSL 2 BASIC7.08□□□□□ -1.28
COL8A1P27658 AC112225.1-201ENST00000508230 297 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC7.08□□□□□ -1.28
COL8A1P27658 SMIM20-202ENST00000514384 774 ntTSL 5 BASIC7.08□□□□□ -1.28
COL8A1P27658 MTCO2P4-201ENST00000517968 247 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 TRMT10BP1-201ENST00000519377 943 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC7.08□□□□□ -1.28
COL8A1P27658 EGLN3P1-201ENST00000541727 720 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 AC084033.3-201ENST00000551421 451 ntTSL 2 BASIC7.08□□□□□ -1.28
COL8A1P27658 AC078814.3-201ENST00000553036 491 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 AL355102.4-201ENST00000553638 738 ntTSL 2 BASIC7.08□□□□□ -1.28
COL8A1P27658 SRSF5-206ENST00000554021 567 ntTSL 4 BASIC7.08□□□□□ -1.28
COL8A1P27658 AC091178.1-204ENST00000577328 366 ntTSL 4 BASIC7.08□□□□□ -1.28
COL8A1P27658 MIR378H-201ENST00000579966 83 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 CD300LF-208ENST00000581500 720 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL8A1P27658 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC7.08□□□□□ -1.28
COL8A1P27658 OR7E19P-202ENST00000589942 844 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 RPS4XP16-202ENST00000595905 807 ntTSL 5 BASIC7.08□□□□□ -1.28
COL8A1P27658 AC018816.2-201ENST00000621460 353 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 AC007347.2-201ENST00000623044 180 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 AL355480.1-201ENST00000629041 99 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 MIR6863-201ENST00000636112 90 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 AC119674.1-207ENST00000641355 633 ntBASIC7.08□□□□□ -1.28
COL8A1P27658 KIF23-203ENST00000395392 3357 ntAPPRIS ALT2 TSL 5 BASIC7.08□□□□□ -1.28
COL8A1P27658 VPS11-206ENST00000614944 3388 ntTSL 2 BASIC7.08□□□□□ -1.28
COL8A1P27658 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC7.08□□□□□ -1.28
COL8A1P27658 ALDOB-201ENST00000374855 2451 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL8A1P27658 AC015969.1-201ENST00000366218 1416 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms