Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL5A3P25940 ZNF720-202ENST00000398696 1339 ntTSL 4 BASIC7.43□□□□□ -1.22
COL5A3P25940 MAPK10-304ENST00000641341 3984 ntBASIC7.43□□□□□ -1.22
COL5A3P25940 HRH1-203ENST00000431010 4278 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL5A3P25940 AOX3P-204ENST00000491025 2107 ntBASIC7.42□□□□□ -1.22
COL5A3P25940 CARF-202ENST00000402905 5938 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL5A3P25940 ODF2L-202ENST00000317336 4376 ntTSL 5 BASIC7.42□□□□□ -1.22
COL5A3P25940 CNTNAP4-206ENST00000478060 3708 ntTSL 5 BASIC7.42□□□□□ -1.22
COL5A3P25940 PTPRT-207ENST00000373201 12660 ntAPPRIS ALT2 TSL 5 BASIC7.42□□□□□ -1.22
COL5A3P25940 FGA-201ENST00000302053 3678 ntAPPRIS P1 TSL 2 BASIC7.42□□□□□ -1.22
COL5A3P25940 ZNF778-207ENST00000620195 11031 ntAPPRIS P3 TSL 2 BASIC7.42□□□□□ -1.22
COL5A3P25940 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL5A3P25940 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC7.42□□□□□ -1.22
COL5A3P25940 MYL6P5-201ENST00000412707 459 ntBASIC7.42□□□□□ -1.22
COL5A3P25940 NIPA2P1-201ENST00000426223 976 ntBASIC7.42□□□□□ -1.22
COL5A3P25940 VDAC2P4-201ENST00000452925 711 ntBASIC7.42□□□□□ -1.22
COL5A3P25940 RN7SL172P-201ENST00000460535 303 ntBASIC7.42□□□□□ -1.22
COL5A3P25940 RPEP1-201ENST00000504507 658 ntBASIC7.42□□□□□ -1.22
COL5A3P25940 HIGD1AP14-201ENST00000507617 282 ntBASIC7.42□□□□□ -1.22
COL5A3P25940 AC139365.2-201ENST00000517972 253 ntBASIC7.42□□□□□ -1.22
COL5A3P25940 AC073581.1-201ENST00000519036 575 ntBASIC7.42□□□□□ -1.22
COL5A3P25940 APPL2-203ENST00000546731 684 ntTSL 2 BASIC7.42□□□□□ -1.22
COL5A3P25940 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC7.42□□□□□ -1.22
COL5A3P25940 AL390318.1-201ENST00000624564 687 ntBASIC7.42□□□□□ -1.22
COL5A3P25940 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC7.42□□□□□ -1.22
COL5A3P25940 APOBEC4-201ENST00000308641 2650 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL5A3P25940 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC7.42□□□□□ -1.22
COL5A3P25940 DIO2-202ENST00000438257 6136 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL5A3P25940 MYOM1-202ENST00000356443 5847 ntAPPRIS P4 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL5A3P25940 IL2RA-203ENST00000379959 3176 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL5A3P25940 LINC01788-201ENST00000419450 2086 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
COL5A3P25940 GTF2IP4-201ENST00000453092 2054 ntBASIC7.42□□□□□ -1.22
COL5A3P25940 USP47-203ENST00000399455 7396 ntAPPRIS ALT2 TSL 5 BASIC7.42□□□□□ -1.22
COL5A3P25940 SGMS2-202ENST00000394684 6149 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL5A3P25940 FBXO30-201ENST00000237281 9009 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL5A3P25940 SPTLC3-201ENST00000399002 6169 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL5A3P25940 LINC01903-201ENST00000580659 2149 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
COL5A3P25940 CA5A-201ENST00000309893 7567 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL5A3P25940 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC7.41□□□□□ -1.22
COL5A3P25940 RNA5SP507-201ENST00000363603 121 ntBASIC7.41□□□□□ -1.22
COL5A3P25940 MIR585-201ENST00000384887 94 ntBASIC7.41□□□□□ -1.22
COL5A3P25940 AC006455.6-201ENST00000426192 893 ntBASIC7.41□□□□□ -1.22
COL5A3P25940 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC7.41□□□□□ -1.22
COL5A3P25940 AC093763.2-201ENST00000505334 1223 ntBASIC7.41□□□□□ -1.22
COL5A3P25940 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC7.41□□□□□ -1.22
COL5A3P25940 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC7.41□□□□□ -1.22
COL5A3P25940 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC7.41□□□□□ -1.22
COL5A3P25940 RPSAP73-201ENST00000614820 330 ntBASIC7.41□□□□□ -1.22
COL5A3P25940 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC7.41□□□□□ -1.22
COL5A3P25940 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC7.41□□□□□ -1.22
COL5A3P25940 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
COL5A3P25940 LGSN-202ENST00000370658 5213 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
COL5A3P25940 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC7.41□□□□□ -1.22
COL5A3P25940 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC7.41□□□□□ -1.22
COL5A3P25940 NEK1-208ENST00000512193 4430 ntAPPRIS ALT2 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL5A3P25940 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC7.41□□□□□ -1.22
COL5A3P25940 PDPR-210ENST00000568530 7223 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL5A3P25940 MED12-202ENST00000374080 6795 ntAPPRIS P2 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL5A3P25940 CTAGE11P-201ENST00000451540 2353 ntBASIC7.41□□□□□ -1.22
COL5A3P25940 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC7.41□□□□□ -1.22
COL5A3P25940 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC7.41□□□□□ -1.22
COL5A3P25940 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
COL5A3P25940 LINC02249-202ENST00000562624 4260 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
COL5A3P25940 MRPS27-202ENST00000457646 2628 ntTSL 2 BASIC7.41□□□□□ -1.22
COL5A3P25940 FAM32BP-201ENST00000344033 333 ntBASIC7.41□□□□□ -1.22
COL5A3P25940 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC7.41□□□□□ -1.22
COL5A3P25940 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
COL5A3P25940 CYCSP6-201ENST00000434498 302 ntBASIC7.41□□□□□ -1.22
COL5A3P25940 SNORA26.10-201ENST00000516427 141 ntBASIC7.41□□□□□ -1.22
COL5A3P25940 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC7.41□□□□□ -1.22
COL5A3P25940 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC7.41□□□□□ -1.22
COL5A3P25940 SUGT1P3-202ENST00000604259 383 ntBASIC7.41□□□□□ -1.22
COL5A3P25940 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC7.4□□□□□ -1.22
COL5A3P25940 OLFM3-202ENST00000370103 3255 ntAPPRIS P3 TSL 1 (best) BASIC7.4□□□□□ -1.22
COL5A3P25940 CACNB2-215ENST00000615785 3707 ntTSL 5 BASIC7.4□□□□□ -1.22
COL5A3P25940 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC7.4□□□□□ -1.22
COL5A3P25940 LINC00261-202ENST00000564492 4912 ntTSL 3 BASIC7.4□□□□□ -1.22
COL5A3P25940 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC7.4□□□□□ -1.22
COL5A3P25940 LINC00861-201ENST00000500989 5330 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
COL5A3P25940 DRP2-202ENST00000395209 7277 ntAPPRIS P3 TSL 1 (best) BASIC7.4□□□□□ -1.22
COL5A3P25940 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC7.4□□□□□ -1.23
COL5A3P25940 MIR130A-201ENST00000385274 89 ntBASIC7.4□□□□□ -1.23
COL5A3P25940 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC7.4□□□□□ -1.23
COL5A3P25940 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC7.4□□□□□ -1.23
COL5A3P25940 CYCSP12-201ENST00000437729 300 ntBASIC7.4□□□□□ -1.23
COL5A3P25940 OR7E116P-201ENST00000448529 957 ntBASIC7.4□□□□□ -1.23
COL5A3P25940 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC7.4□□□□□ -1.23
COL5A3P25940 DCN-210ENST00000547568 823 ntTSL 3 BASIC7.4□□□□□ -1.23
COL5A3P25940 AC027334.1-201ENST00000603257 310 ntBASIC7.4□□□□□ -1.23
COL5A3P25940 AL118522.2-201ENST00000616045 615 ntBASIC7.4□□□□□ -1.23
COL5A3P25940 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC7.4□□□□□ -1.23
COL5A3P25940 ASH1L-202ENST00000392403 10979 ntAPPRIS P2 TSL 5 BASIC7.4□□□□□ -1.23
COL5A3P25940 TDP1-201ENST00000335725 3702 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
COL5A3P25940 ZNF91-202ENST00000397082 3572 ntAPPRIS ALT2 TSL 2 BASIC7.4□□□□□ -1.23
COL5A3P25940 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC7.4□□□□□ -1.23
COL5A3P25940 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC7.4□□□□□ -1.23
COL5A3P25940 RGS4-203ENST00000367909 3200 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
COL5A3P25940 ITPK1-AS1-201ENST00000553639 4701 ntBASIC7.4□□□□□ -1.23
COL5A3P25940 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
COL5A3P25940 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC7.39□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms