Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC6.82□□□□□ -1.32
BDNFP23560 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
BDNFP23560 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC6.82□□□□□ -1.32
BDNFP23560 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC6.81□□□□□ -1.32
BDNFP23560 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC6.81□□□□□ -1.32
BDNFP23560 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC6.81□□□□□ -1.32
BDNFP23560 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
BDNFP23560 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC6.81□□□□□ -1.32
BDNFP23560 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC6.81□□□□□ -1.32
BDNFP23560 ERG-202ENST00000398897 4651 ntTSL 5 BASIC6.81□□□□□ -1.32
BDNFP23560 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC6.81□□□□□ -1.32
BDNFP23560 OSBPL9P1-201ENST00000604744 1469 ntBASIC6.81□□□□□ -1.32
BDNFP23560 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC6.81□□□□□ -1.32
BDNFP23560 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
BDNFP23560 AC112243.1-201ENST00000623949 3851 ntBASIC6.81□□□□□ -1.32
BDNFP23560 NUMB-229ENST00000557597 3547 ntAPPRIS P3 TSL 1 (best) BASIC6.81□□□□□ -1.32
BDNFP23560 AC100858.3-201ENST00000533516 1605 ntTSL 5 BASIC6.81□□□□□ -1.32
BDNFP23560 AC062029.1-202ENST00000606164 3651 ntBASIC6.81□□□□□ -1.32
BDNFP23560 OR51J1-201ENST00000332043 951 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
BDNFP23560 RNA5SP279-201ENST00000365513 117 ntBASIC6.81□□□□□ -1.32
BDNFP23560 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC6.81□□□□□ -1.32
BDNFP23560 MIR1275-201ENST00000408770 80 ntBASIC6.81□□□□□ -1.32
BDNFP23560 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC6.81□□□□□ -1.32
BDNFP23560 MTND2P12-201ENST00000417560 1252 ntBASIC6.81□□□□□ -1.32
BDNFP23560 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC6.81□□□□□ -1.32
BDNFP23560 PLA2G12AP2-201ENST00000424744 264 ntBASIC6.81□□□□□ -1.32
BDNFP23560 MTND4LP13-201ENST00000425022 298 ntBASIC6.81□□□□□ -1.32
BDNFP23560 UBE2V2P3-201ENST00000433562 437 ntBASIC6.81□□□□□ -1.32
BDNFP23560 OR52E7P-201ENST00000452394 933 ntBASIC6.81□□□□□ -1.32
BDNFP23560 LINC01487-201ENST00000462531 905 ntTSL 2 BASIC6.81□□□□□ -1.32
BDNFP23560 TRIM36-IT1-201ENST00000503723 881 ntBASIC6.81□□□□□ -1.32
BDNFP23560 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC6.81□□□□□ -1.32
BDNFP23560 AC239584.1-201ENST00000510419 732 ntTSL 5 BASIC6.81□□□□□ -1.32
BDNFP23560 AP003548.1-201ENST00000523862 711 ntTSL 3 BASIC6.81□□□□□ -1.32
BDNFP23560 AP000662.1-201ENST00000530952 487 ntBASIC6.81□□□□□ -1.32
BDNFP23560 RPL27A-211ENST00000532359 406 ntTSL 2 BASIC6.81□□□□□ -1.32
BDNFP23560 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC6.81□□□□□ -1.32
BDNFP23560 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC6.81□□□□□ -1.32
BDNFP23560 PWRN1-210ENST00000568045 1299 ntTSL 2 BASIC6.81□□□□□ -1.32
BDNFP23560 SEPT4-AS1-202ENST00000580589 653 ntTSL 3 BASIC6.81□□□□□ -1.32
BDNFP23560 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC6.81□□□□□ -1.32
BDNFP23560 RMDN2-AS1-203ENST00000601029 613 ntTSL 5 BASIC6.81□□□□□ -1.32
BDNFP23560 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC6.81□□□□□ -1.32
BDNFP23560 AL592494.3-201ENST00000609485 464 ntBASIC6.81□□□□□ -1.32
BDNFP23560 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC6.81□□□□□ -1.32
BDNFP23560 AC015922.4-201ENST00000612568 690 ntBASIC6.81□□□□□ -1.32
BDNFP23560 ERC2-214ENST00000612797 3831 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
BDNFP23560 MIR6721-201ENST00000617181 87 ntBASIC6.81□□□□□ -1.32
BDNFP23560 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC6.81□□□□□ -1.32
BDNFP23560 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC6.81□□□□□ -1.32
BDNFP23560 NFAT5-202ENST00000354436 13229 ntAPPRIS P4 TSL 1 (best) BASIC6.81□□□□□ -1.32
BDNFP23560 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
BDNFP23560 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC6.81□□□□□ -1.32
BDNFP23560 COG2-209ENST00000534989 2963 ntTSL 2 BASIC6.81□□□□□ -1.32
BDNFP23560 ZC3H8-208ENST00000615791 1527 ntAPPRIS ALT2 TSL 5 BASIC6.81□□□□□ -1.32
BDNFP23560 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC6.8□□□□□ -1.32
BDNFP23560 AL021877.2-201ENST00000624442 10684 ntBASIC6.8□□□□□ -1.32
BDNFP23560 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC6.8□□□□□ -1.32
BDNFP23560 ATP8B5P-203ENST00000430846 3962 ntTSL 2 BASIC6.8□□□□□ -1.32
BDNFP23560 NEK2P2-201ENST00000438441 1338 ntBASIC6.8□□□□□ -1.32
BDNFP23560 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
BDNFP23560 CASC19-246ENST00000641625 1606 ntBASIC6.8□□□□□ -1.32
BDNFP23560 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC6.8□□□□□ -1.32
BDNFP23560 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC6.8□□□□□ -1.32
BDNFP23560 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
BDNFP23560 RN7SKP187-201ENST00000365536 330 ntBASIC6.8□□□□□ -1.32
BDNFP23560 AC240504.1-201ENST00000395709 845 ntBASIC6.8□□□□□ -1.32
BDNFP23560 HMGB3P7-201ENST00000400214 611 ntBASIC6.8□□□□□ -1.32
BDNFP23560 ALDH7A1P4-201ENST00000412255 178 ntBASIC6.8□□□□□ -1.32
BDNFP23560 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC6.8□□□□□ -1.32
BDNFP23560 DHFRP2-201ENST00000414224 547 ntBASIC6.8□□□□□ -1.32
BDNFP23560 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC6.8□□□□□ -1.32
BDNFP23560 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC6.8□□□□□ -1.32
BDNFP23560 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC6.8□□□□□ -1.32
BDNFP23560 AJ239321.1-201ENST00000424255 564 ntBASIC6.8□□□□□ -1.32
BDNFP23560 FABP5P2-201ENST00000439042 408 ntBASIC6.8□□□□□ -1.32
BDNFP23560 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC6.8□□□□□ -1.32
BDNFP23560 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
BDNFP23560 AC118758.1-202ENST00000454719 225 ntBASIC6.8□□□□□ -1.32
BDNFP23560 BZW1P1-201ENST00000454901 1240 ntBASIC6.8□□□□□ -1.32
BDNFP23560 AC105389.1-201ENST00000510602 561 ntTSL 4 BASIC6.8□□□□□ -1.32
BDNFP23560 RNA5SP441-201ENST00000516809 88 ntBASIC6.8□□□□□ -1.32
BDNFP23560 IGHVIII-47-1-201ENST00000518187 331 ntBASIC6.8□□□□□ -1.32
BDNFP23560 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC6.8□□□□□ -1.32
BDNFP23560 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC6.8□□□□□ -1.32
BDNFP23560 AC005632.2-201ENST00000564271 828 ntBASIC6.8□□□□□ -1.32
BDNFP23560 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC6.8□□□□□ -1.32
BDNFP23560 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
BDNFP23560 PLEKHA3P1-201ENST00000598554 894 ntBASIC6.8□□□□□ -1.32
BDNFP23560 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC6.8□□□□□ -1.32
BDNFP23560 AL606537.1-201ENST00000607258 2011 ntBASIC6.8□□□□□ -1.32
BDNFP23560 AC008833.1-201ENST00000611633 691 ntBASIC6.8□□□□□ -1.32
BDNFP23560 LINC02341-202ENST00000637462 1295 ntTSL 5 BASIC6.8□□□□□ -1.32
BDNFP23560 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
BDNFP23560 LCOR-201ENST00000286067 4542 ntBASIC6.8□□□□□ -1.32
BDNFP23560 INTS4-209ENST00000534064 3156 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
BDNFP23560 MAPK10-344ENST00000641718 3746 ntBASIC6.8□□□□□ -1.32
BDNFP23560 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC6.8□□□□□ -1.32
BDNFP23560 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
BDNFP23560 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC6.8□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 129 ms