Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 PTPRB-209ENST00000550857 5839 ntAPPRIS ALT2 TSL 1 (best) BASIC8.59□□□□□ -1.03
VPS9D1Q9Y2B5 NUMA1-232ENST00000613205 3940 ntAPPRIS ALT2 TSL 5 BASIC8.59□□□□□ -1.03
VPS9D1Q9Y2B5 STON2-201ENST00000267540 2977 ntAPPRIS P3 TSL 1 (best) BASIC8.59□□□□□ -1.03
VPS9D1Q9Y2B5 THBS3-201ENST00000368378 3145 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
VPS9D1Q9Y2B5 MYRFL-205ENST00000552032 3139 ntAPPRIS P2 TSL 5 BASIC8.59□□□□□ -1.03
VPS9D1Q9Y2B5 GJC1-201ENST00000330514 3295 ntAPPRIS P1 TSL 2 BASIC8.59□□□□□ -1.03
VPS9D1Q9Y2B5 MASP1-202ENST00000296280 4015 ntAPPRIS P4 TSL 1 (best) BASIC8.59□□□□□ -1.03
VPS9D1Q9Y2B5 BDNF-204ENST00000395980 4030 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
VPS9D1Q9Y2B5 CREBRF-205ENST00000522692 2466 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
VPS9D1Q9Y2B5 ZNF665-201ENST00000396424 4159 ntAPPRIS P1 TSL 2 BASIC8.59□□□□□ -1.03
VPS9D1Q9Y2B5 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC8.59□□□□□ -1.03
VPS9D1Q9Y2B5 CDY4P-201ENST00000418290 1513 ntBASIC8.59□□□□□ -1.03
VPS9D1Q9Y2B5 CALCOCO2-215ENST00000509507 1512 ntTSL 2 BASIC8.59□□□□□ -1.03
VPS9D1Q9Y2B5 TP63-204ENST00000392460 1668 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
VPS9D1Q9Y2B5 AL158206.1-201ENST00000563205 1965 ntBASIC8.59□□□□□ -1.03
VPS9D1Q9Y2B5 TRIM6-212ENST00000621176 3005 ntTSL 5 BASIC8.59□□□□□ -1.04
VPS9D1Q9Y2B5 KIAA1524-201ENST00000295746 4075 ntAPPRIS P2 TSL 1 (best) BASIC8.59□□□□□ -1.04
VPS9D1Q9Y2B5 APOB-201ENST00000233242 14121 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 AC132825.1-201ENST00000463573 2247 ntBASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 HTT-201ENST00000355072 13474 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 KLF7-202ENST00000412414 7954 ntTSL 2 BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 CD109-203ENST00000437994 9401 ntAPPRIS ALT1 TSL 1 (best) BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 AP001528.3-201ENST00000624364 3249 ntBASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 XAF1-202ENST00000361842 3623 ntAPPRIS P4 TSL 1 (best) BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 ASB15-206ENST00000451558 4788 ntAPPRIS P1 TSL 5 BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 LGALS8-202ENST00000323938 1855 ntTSL 5 BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 SKIV2L2-201ENST00000230640 4192 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 DOCK5-201ENST00000276440 10075 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 WFDC10B-202ENST00000335769 475 ntAPPRIS P4 TSL 1 (best) BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 MIR146B-201ENST00000365699 73 ntBASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 FETUB-202ENST00000382134 1055 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 EEF1AKMT1-201ENST00000382754 875 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 SNORA32.2-201ENST00000384049 122 ntBASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 CFAP61-207ENST00000389656 776 ntAPPRIS ALT2 TSL 1 (best) BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 COX6B1-202ENST00000392201 435 ntAPPRIS P1 TSL 3 BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 RPS7-204ENST00000407445 833 ntTSL 2 BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 AC084030.1-202ENST00000413385 880 ntTSL 5 BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 HMGB1P11-201ENST00000413899 637 ntBASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 AL450468.1-201ENST00000415166 450 ntTSL 3 BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 MAGEB6P1-201ENST00000416929 1224 ntAPPRIS P1 BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 ELOCP4-201ENST00000420090 333 ntBASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 AL022100.2-201ENST00000422548 389 ntTSL 3 BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 ARHGEF7-IT1-201ENST00000423329 804 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 AP000350.3-201ENST00000440099 289 ntBASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 AL512605.1-202ENST00000441919 381 ntBASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 AL590609.1-201ENST00000442164 328 ntBASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 RN7SL156P-201ENST00000480334 304 ntBASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 AC018639.1-201ENST00000492994 442 ntBASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 CDH12P2-201ENST00000504393 298 ntBASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 AC008619.1-201ENST00000524312 567 ntTSL 4 BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 GLTPP1-201ENST00000528859 622 ntBASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 AP002404.1-201ENST00000532005 451 ntBASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 AMN1-207ENST00000536761 1025 ntTSL 2 BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 NDFIP1P1-201ENST00000543144 525 ntBASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 SNRPGP18-201ENST00000553000 214 ntBASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 AC015871.1-201ENST00000557880 1081 ntBASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 LINC02134-201ENST00000562980 557 ntTSL 5 BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 AC034105.5-201ENST00000564017 314 ntBASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 MIR3972-201ENST00000582732 87 ntBASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 MIR4664-201ENST00000583819 71 ntBASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 HMGN2P46-208ENST00000598619 490 ntBASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 AC012065.3-201ENST00000602736 439 ntBASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 CSNK1A1-210ENST00000606719 835 ntTSL 2 BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 AC007663.4-201ENST00000608275 631 ntBASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 DISC2.1-201ENST00000612827 205 ntBASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 AL683826.1-201ENST00000624104 627 ntBASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 NUP214-201ENST00000359428 7600 ntAPPRIS P3 TSL 1 (best) BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 CCDC83-202ENST00000342404 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 NCKAP5-204ENST00000409213 2390 ntAPPRIS ALT2 TSL 5 BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 ZNF383-208ENST00000590503 1673 ntAPPRIS P1 TSL 5 BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 ZMYND11-216ENST00000602682 1687 ntTSL 5 BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 AL160191.3-201ENST00000619152 2203 ntBASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 ZNF195-230ENST00000620374 3342 ntAPPRIS ALT2 TSL 5 BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 NOP14-AS1-207ENST00000515194 3860 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 PPWD1-215ENST00000538977 2055 ntTSL 2 BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 SYNPR-201ENST00000295894 2607 ntAPPRIS ALT1 TSL 1 (best) BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 ASB8-205ENST00000536549 2610 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 SLC30A8-208ENST00000521243 1393 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 SLC26A9-201ENST00000340781 4510 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 MAPK10-228ENST00000512689 2583 ntTSL 5 BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 BRDT-205ENST00000399546 3357 ntAPPRIS ALT2 TSL 2 BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 MLANA-203ENST00000381477 2415 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
VPS9D1Q9Y2B5 AC024560.2-201ENST00000507981 1497 ntBASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 AC217777.1-201ENST00000570034 1471 ntBASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 GLDCP1-201ENST00000510885 2678 ntBASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 MDM2-202ENST00000258149 12633 ntAPPRIS P2 TSL 1 (best) BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 ASXL2-201ENST00000336112 8889 ntAPPRIS ALT2 TSL 1 (best) BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 AC113189.6-201ENST00000636696 3591 ntAPPRIS P1 TSL 5 BASIC8.57□□□□□ -1.04
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms