Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 OR2B8P-201ENST00000432841 938 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 HMGN2P24-201ENST00000433516 273 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 USP9YP35-201ENST00000435696 412 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 GNA14-AS1-201ENST00000439145 605 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 MTND4P18-201ENST00000447010 465 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 AL034418.1-201ENST00000448675 860 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 OR7A15P-201ENST00000449848 1009 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 AC092570.2-201ENST00000452117 1143 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 AL355032.1-201ENST00000472981 438 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 AC117394.1-201ENST00000477323 567 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 RN7SL89P-201ENST00000480252 283 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 AC233724.1-201ENST00000503894 233 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 IMPA1P1-201ENST00000510718 842 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 LEF1-AS1-206ENST00000512129 430 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 RNA5SP287-201ENST00000516358 103 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 MTND4LP26-201ENST00000518144 282 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 MTND6P19-201ENST00000519399 524 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 AC090699.1-201ENST00000586264 321 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 FARSA-AS1-201ENST00000592636 241 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 AC093063.1-201ENST00000599317 363 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 MARK3P1-201ENST00000604796 643 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 AC091946.2-201ENST00000606105 291 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 AC106028.5-201ENST00000610332 395 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 Z99129.1-201ENST00000612510 255 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 KDM5DP1-201ENST00000622542 298 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 AC015804.1-201ENST00000622935 435 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 AC091932.2-201ENST00000623014 291 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 AC015726.3-201ENST00000624501 418 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 SELENOP-203ENST00000506577 2204 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 AC005832.2-201ENST00000538921 1430 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 AC127502.2-201ENST00000602663 2351 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 TACC1-207ENST00000519416 5510 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 TACC1-210ENST00000520615 5509 ntTSL 2 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 FANCL-203ENST00000403295 1576 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 LINC01132-201ENST00000437601 3793 ntTSL 4 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 AL603750.1-201ENST00000624216 1717 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 BOLL-204ENST00000430004 2987 ntTSL 2 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 SPRYD4-201ENST00000338146 10779 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 SLC4A10-201ENST00000272716 3414 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 LINC00208-201ENST00000304233 2150 ntTSL 2 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 RECQL-204ENST00000444129 3702 ntAPPRIS P1 TSL 2 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 FAM19A2-211ENST00000550003 2499 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 USP32P2-201ENST00000412260 4329 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 SLC23A2-201ENST00000338244 6944 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 PTPRT-211ENST00000618610 3230 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 RGS2-201ENST00000235382 1354 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 AC007255.1-201ENST00000450540 1376 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 MTFR2-205ENST00000451457 1524 ntAPPRIS P2 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 TSC1-203ENST00000440111 8463 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 PRDM10-205ENST00000526082 3308 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 RNF41-212ENST00000615206 5216 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 ARHGEF7-208ENST00000426073 4921 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 FUT10-206ENST00000518672 3115 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 AC007996.1-201ENST00000620414 2821 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 NDUFS1-204ENST00000440274 2394 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 ZFYVE9-204ENST00000371591 4874 ntAPPRIS P4 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 PHF7-202ENST00000347025 1472 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 CDYLP1-201ENST00000419017 1458 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 FDFT1-208ENST00000525777 1472 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 ALG13-201ENST00000251943 3997 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 LOXHD1-201ENST00000300591 3970 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 ERBB3-221ENST00000553131 3237 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 CACNA1D-219ENST00000636938 6868 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 MKL2-205ENST00000572567 2185 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 FAM107A-202ENST00000394481 3465 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 SNX16-202ENST00000353788 3032 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 CD86-202ENST00000330540 2708 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 ANKRD36BP1-202ENST00000604892 1417 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 AL121657.1-201ENST00000327215 531 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 Y_RNA.6-201ENST00000362350 114 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 RNU6-619P-201ENST00000365146 108 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 SSX9-201ENST00000376909 591 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 SNORA10B-201ENST00000384458 133 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 SEC61G-202ENST00000395535 459 ntAPPRIS P1 TSL 2 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 CYCSP45-201ENST00000402289 315 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 AL117344.1-201ENST00000407196 616 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 IGLC6-201ENST00000410078 317 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 MEG8-201ENST00000414488 800 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 MTND1P23-201ENST00000416931 372 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 AC004448.2-201ENST00000422360 586 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 AC110995.1-202ENST00000422914 860 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 SNHG17-204ENST00000423536 517 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC6.03□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms