Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC6.02□□□□□ -1.45
CCDC28BQ9BUN5 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC28BQ9BUN5 AC005514.1-201ENST00000623521 208 ntBASIC6.02□□□□□ -1.45
CCDC28BQ9BUN5 AL355480.4-201ENST00000626823 69 ntBASIC6.02□□□□□ -1.45
CCDC28BQ9BUN5 AC079776.5-201ENST00000641920 211 ntBASIC6.02□□□□□ -1.45
CCDC28BQ9BUN5 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC6.02□□□□□ -1.45
CCDC28BQ9BUN5 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC28BQ9BUN5 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC28BQ9BUN5 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC28BQ9BUN5 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC28BQ9BUN5 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC28BQ9BUN5 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 AP005435.3-201ENST00000531260 3198 ntBASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 U3.10-201ENST00000364459 214 ntBASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 TINAG-202ENST00000370864 692 ntTSL 2 BASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 MIR1231-201ENST00000408101 92 ntBASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 RNU6-233P-201ENST00000410845 141 ntBASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 RPL3P11-201ENST00000434028 1146 ntBASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 LRTOMT-209ENST00000440313 253 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 AL031963.1-201ENST00000447644 695 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 AC114982.2-201ENST00000461396 358 ntBASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 UCK2-205ENST00000469256 753 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 LINC01262-201ENST00000513681 879 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 RN7SKP242-201ENST00000515967 289 ntBASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 AL133399.1-201ENST00000527476 298 ntBASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 AC069234.3-201ENST00000544939 569 ntTSL 4 BASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 AC080011.1-201ENST00000552378 989 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 LINC02284-201ENST00000558120 573 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 SUPT4H1-207ENST00000581540 668 ntTSL 2 BASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 CHMP1B-AS1-201ENST00000586474 553 ntTSL 4 BASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 AC010139.1-201ENST00000596963 445 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 RPS4XP21-201ENST00000603814 750 ntBASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 AC005261.6-201ENST00000623072 1387 ntBASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 AL591135.1-201ENST00000401578 5914 ntBASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC28BQ9BUN5 AL049869.1-201ENST00000556933 1402 ntBASIC6□□□□□ -1.45
CCDC28BQ9BUN5 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC6□□□□□ -1.45
CCDC28BQ9BUN5 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC6□□□□□ -1.45
CCDC28BQ9BUN5 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC28BQ9BUN5 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC28BQ9BUN5 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC6□□□□□ -1.45
CCDC28BQ9BUN5 ACTR3C-201ENST00000252071 1218 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC28BQ9BUN5 SNORA43.1-201ENST00000364863 140 ntBASIC6□□□□□ -1.45
CCDC28BQ9BUN5 TRAV22-201ENST00000390450 464 ntAPPRIS P1 BASIC6□□□□□ -1.45
CCDC28BQ9BUN5 RPL12P23-201ENST00000405880 490 ntBASIC6□□□□□ -1.45
CCDC28BQ9BUN5 AL121878.1-201ENST00000418638 859 ntBASIC6□□□□□ -1.45
CCDC28BQ9BUN5 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC6□□□□□ -1.45
CCDC28BQ9BUN5 OR52S1P-201ENST00000427016 937 ntBASIC6□□□□□ -1.45
CCDC28BQ9BUN5 TRBV29OR9-2-201ENST00000427589 333 ntBASIC6□□□□□ -1.45
CCDC28BQ9BUN5 AC099670.2-201ENST00000435130 321 ntBASIC6□□□□□ -1.45
CCDC28BQ9BUN5 AC013403.1-201ENST00000436954 263 ntBASIC6□□□□□ -1.45
CCDC28BQ9BUN5 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC6□□□□□ -1.45
CCDC28BQ9BUN5 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC6□□□□□ -1.45
CCDC28BQ9BUN5 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC6□□□□□ -1.45
CCDC28BQ9BUN5 AL162739.1-201ENST00000450606 307 ntBASIC6□□□□□ -1.45
CCDC28BQ9BUN5 RN7SL352P-201ENST00000466002 277 ntBASIC6□□□□□ -1.45
CCDC28BQ9BUN5 TRBV5-2-201ENST00000489095 273 ntBASIC6□□□□□ -1.45
CCDC28BQ9BUN5 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC6□□□□□ -1.45
CCDC28BQ9BUN5 AC139713.2-204ENST00000511042 342 ntTSL 5 BASIC6□□□□□ -1.45
CCDC28BQ9BUN5 SCARNA11.1-201ENST00000516918 132 ntBASIC6□□□□□ -1.45
CCDC28BQ9BUN5 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC6□□□□□ -1.45
CCDC28BQ9BUN5 AP001284.1-201ENST00000528393 2118 ntBASIC6□□□□□ -1.45
CCDC28BQ9BUN5 AP004609.2-201ENST00000532177 190 ntBASIC6□□□□□ -1.45
CCDC28BQ9BUN5 RPL3P13-201ENST00000550415 216 ntBASIC6□□□□□ -1.45
CCDC28BQ9BUN5 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC6□□□□□ -1.45
CCDC28BQ9BUN5 DYNLRB2-204ENST00000562982 492 ntTSL 3 BASIC6□□□□□ -1.45
CCDC28BQ9BUN5 STRADA-207ENST00000578008 1153 ntTSL 5 BASIC6□□□□□ -1.45
CCDC28BQ9BUN5 AF186192.2-204ENST00000581667 524 ntBASIC6□□□□□ -1.45
CCDC28BQ9BUN5 RN7SL475P-201ENST00000583379 298 ntBASIC6□□□□□ -1.45
CCDC28BQ9BUN5 MIR7515HG-250ENST00000592565 856 ntTSL 5 BASIC6□□□□□ -1.45
CCDC28BQ9BUN5 RPARP-AS1-204ENST00000594818 445 ntTSL 3 BASIC6□□□□□ -1.45
CCDC28BQ9BUN5 AC020914.2-201ENST00000598220 430 ntTSL 4 BASIC6□□□□□ -1.45
CCDC28BQ9BUN5 FXYD6P1-201ENST00000604857 285 ntBASIC6□□□□□ -1.45
CCDC28BQ9BUN5 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC28BQ9BUN5 AC008163.1-201ENST00000636281 1455 ntTSL 5 BASIC6□□□□□ -1.45
CCDC28BQ9BUN5 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC6□□□□□ -1.45
CCDC28BQ9BUN5 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC28BQ9BUN5 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC28BQ9BUN5 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.99□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 86 ms