Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 AC010624.4-201ENST00000597606 1351 ntBASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 SUPT20H-224ENST00000542180 2478 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 AL136984.1-201ENST00000607611 1893 ntBASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 AC093829.1-201ENST00000506662 1618 ntBASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 DHRS9-204ENST00000428522 1678 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 RN7SKP78-201ENST00000364711 318 ntBASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 RN7SKP144-201ENST00000411108 279 ntBASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 HMGN1P20-201ENST00000411849 300 ntBASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 AL359839.1-201ENST00000451975 1160 ntBASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 PPIAP27-201ENST00000453800 265 ntBASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 AL133351.3-201ENST00000454998 193 ntBASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 AC023194.2-201ENST00000465398 406 ntBASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 AC098847.1-201ENST00000473094 348 ntBASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 AC068721.1-201ENST00000507156 583 ntTSL 5 BASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 AC106800.3-201ENST00000511389 308 ntBASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 AP000662.1-201ENST00000530952 487 ntBASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 AC079905.1-201ENST00000549280 475 ntBASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 AC092332.1-201ENST00000563684 829 ntBASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 OCLM-201ENST00000574641 884 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 AC090616.1-201ENST00000583895 447 ntBASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 AC004801.6-201ENST00000616571 978 ntBASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 MIR6729-201ENST00000618194 65 ntBASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 PSMD10P2-203ENST00000627340 914 ntTSL 5 BASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 BBOX1-205ENST00000529202 1725 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
CCDC3Q9BQI4 MIER3-205ENST00000409421 2152 ntTSL 2 BASIC6.15□□□□□ -1.43
CCDC3Q9BQI4 CCR9-204ENST00000422395 1331 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
CCDC3Q9BQI4 RASSF8-216ENST00000615708 1328 ntTSL 5 BASIC6.15□□□□□ -1.43
CCDC3Q9BQI4 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.43
CCDC3Q9BQI4 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
CCDC3Q9BQI4 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
CCDC3Q9BQI4 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
CCDC3Q9BQI4 AL031651.1-201ENST00000615357 1438 ntBASIC6.15□□□□□ -1.43
CCDC3Q9BQI4 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC6.15□□□□□ -1.43
CCDC3Q9BQI4 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
CCDC3Q9BQI4 AC007406.5-201ENST00000570140 3170 ntBASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 LINC02532-208ENST00000602621 2232 ntTSL 2 BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 EGFEM1P-205ENST00000483846 2327 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 GYPA-214ENST00000641688 1764 ntAPPRIS ALT2 BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 AC066692.1-201ENST00000421721 457 ntBASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 AC242426.1-201ENST00000435270 960 ntBASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 AL359644.1-204ENST00000440807 440 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 MAGI2-AS3-210ENST00000448636 798 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 PPIAP20-201ENST00000449839 135 ntBASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 PPIAP7-201ENST00000454070 489 ntBASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 AC084754.1-201ENST00000463466 464 ntBASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 RPL5P12-201ENST00000477071 851 ntBASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 HMGB3P14-201ENST00000494195 599 ntBASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 AC131182.1-201ENST00000509184 657 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 IGKV3D-34-201ENST00000522638 302 ntBASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 AP000620.1-201ENST00000527147 504 ntBASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 NANOGNBP2-201ENST00000544753 553 ntBASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 AP005901.4-201ENST00000577336 569 ntBASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 AC115989.2-201ENST00000578640 563 ntBASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 AC005332.4-201ENST00000592752 579 ntBASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC6.14□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 147.5 ms