Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC012653.2-201ENST00000621880 420 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 MIR6719-201ENST00000622428 87 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 AC027348.2-201ENST00000624375 642 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 TRPS1-203ENST00000395715 9990 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AL121768.1-201ENST00000613917 2544 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 MEF2C-209ENST00000504921 7561 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 PSMA6P1-201ENST00000400275 741 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 ANKRD54P1-201ENST00000433115 471 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC023906.3-201ENST00000559825 874 ntTSL 5 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AP005202.2-201ENST00000582386 658 ntTSL 3 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 MIR7854-201ENST00000620068 65 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 TMEM132B-201ENST00000299308 10906 ntAPPRIS P3 TSL 5 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 LINC00559-201ENST00000569476 3867 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 MTHFD2P5-201ENST00000320415 844 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AL096711.1-201ENST00000404780 554 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 YWHAEP1-201ENST00000453697 763 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 SNORD46.2-201ENST00000516021 102 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 RN7SL404P-201ENST00000582421 281 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 TTN-AS1-268ENST00000629094 604 ntTSL 5 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC011815.2-201ENST00000618230 2021 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 SPIRE1-206ENST00000453447 2107 ntTSL 5 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 CCNT2P1-201ENST00000423082 1315 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC044839.1-206ENST00000635559 1324 ntTSL 5 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AL137918.1-201ENST00000624542 1922 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 LINC00362-201ENST00000414345 264 ntTSL 2 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AL360013.1-201ENST00000419031 858 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 CYCSP51-201ENST00000443545 318 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC103563.5-201ENST00000455643 364 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 PDE4DIP-208ENST00000464103 1055 ntTSL 5 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 LINC01098-201ENST00000507870 1034 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC022784.1-201ENST00000512942 699 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC008662.1-201ENST00000521805 674 ntTSL 3 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 MIR6730-201ENST00000622213 67 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 Metazoa_SRP.106-201ENST00000622471 296 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC073488.6-201ENST00000632293 754 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 RPL31P11-201ENST00000426558 1558 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 CASC19-238ENST00000641523 1558 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 SRBD1-201ENST00000263736 3681 ntAPPRIS P1 TSL 2 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 SAGE3P-201ENST00000619800 1635 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 TRAV19-201ENST00000390447 467 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 SNORA17A-201ENST00000391185 133 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC002504.1-201ENST00000438281 691 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 MAGI2-AS3-210ENST00000448636 798 ntTSL 5 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 CFL1P4-201ENST00000451536 498 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 RPL32P9-201ENST00000487963 407 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC068721.1-201ENST00000507156 583 ntTSL 5 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 RN7SKP238-201ENST00000516483 249 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC008055.1-201ENST00000547032 609 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 MYL6-213ENST00000549017 502 ntTSL 3 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 MRPS21P8-201ENST00000569196 235 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 OFCC1-218ENST00000622909 754 ntAPPRIS ALT2 TSL 5 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 SNORA17.5-201ENST00000630429 132 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC009234.1-201ENST00000634985 895 ntTSL 5 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 CACNA1D-211ENST00000636570 6441 ntAPPRIS ALT2 TSL 5 BASIC1.91□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms