Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 MIR3157-201ENST00000578688 85 ntBASIC5.86□□□□□ -1.47
FOXA1P55317 AP000654.1-201ENST00000602510 1192 ntTSL 5 BASIC5.86□□□□□ -1.47
FOXA1P55317 AP001267.4-201ENST00000602598 545 ntBASIC5.86□□□□□ -1.47
FOXA1P55317 AC012065.3-201ENST00000602736 439 ntBASIC5.86□□□□□ -1.47
FOXA1P55317 RPSAP75-201ENST00000605848 301 ntBASIC5.86□□□□□ -1.47
FOXA1P55317 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC5.86□□□□□ -1.47
FOXA1P55317 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC5.86□□□□□ -1.47
FOXA1P55317 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
FOXA1P55317 EYA4-206ENST00000431403 2154 ntTSL 5 BASIC5.86□□□□□ -1.47
FOXA1P55317 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
FOXA1P55317 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
FOXA1P55317 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
FOXA1P55317 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
FOXA1P55317 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
FOXA1P55317 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC5.85□□□□□ -1.47
FOXA1P55317 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC5.85□□□□□ -1.47
FOXA1P55317 YES1-203ENST00000577961 4554 ntTSL 5 BASIC5.85□□□□□ -1.47
FOXA1P55317 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC5.85□□□□□ -1.47
FOXA1P55317 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
FOXA1P55317 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
FOXA1P55317 AC015799.1-201ENST00000622996 3122 ntBASIC5.85□□□□□ -1.47
FOXA1P55317 KYNUP3-201ENST00000574386 1341 ntBASIC5.85□□□□□ -1.47
FOXA1P55317 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
FOXA1P55317 PSMD10-206ENST00000372296 878 ntTSL 5 BASIC5.85□□□□□ -1.47
FOXA1P55317 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
FOXA1P55317 LYZL1-201ENST00000375500 815 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
FOXA1P55317 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
FOXA1P55317 CEACAM1-208ENST00000403461 1263 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
FOXA1P55317 OR2W4P-201ENST00000406496 926 ntBASIC5.85□□□□□ -1.47
FOXA1P55317 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
FOXA1P55317 RN7SKP166-201ENST00000410812 305 ntBASIC5.85□□□□□ -1.47
FOXA1P55317 AC245096.1-201ENST00000413104 546 ntBASIC5.85□□□□□ -1.47
FOXA1P55317 AL096829.1-201ENST00000413677 457 ntBASIC5.85□□□□□ -1.47
FOXA1P55317 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC5.85□□□□□ -1.47
FOXA1P55317 RPEP4-201ENST00000437636 602 ntBASIC5.85□□□□□ -1.47
FOXA1P55317 CUBNP2-201ENST00000443534 1139 ntBASIC5.85□□□□□ -1.47
FOXA1P55317 AC234771.2-201ENST00000445718 597 ntBASIC5.85□□□□□ -1.47
FOXA1P55317 AL590004.3-202ENST00000445883 451 ntBASIC5.85□□□□□ -1.47
FOXA1P55317 SDC4P-201ENST00000453285 601 ntBASIC5.85□□□□□ -1.47
FOXA1P55317 ACA64.4-201ENST00000459070 127 ntBASIC5.85□□□□□ -1.47
FOXA1P55317 AC117500.1-201ENST00000497352 755 ntBASIC5.85□□□□□ -1.47
FOXA1P55317 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.85□□□□□ -1.47
FOXA1P55317 AC131094.1-201ENST00000506984 490 ntTSL 2 BASIC5.85□□□□□ -1.47
FOXA1P55317 IGHV7-34-1-201ENST00000519200 350 ntBASIC5.85□□□□□ -1.47
FOXA1P55317 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC5.85□□□□□ -1.47
FOXA1P55317 AC036111.2-201ENST00000533247 901 ntBASIC5.85□□□□□ -1.47
FOXA1P55317 AL133297.1-201ENST00000568149 404 ntTSL 2 BASIC5.85□□□□□ -1.47
FOXA1P55317 AC092376.1-201ENST00000569677 335 ntTSL 2 BASIC5.85□□□□□ -1.47
FOXA1P55317 AC007923.1-201ENST00000577970 505 ntTSL 4 BASIC5.85□□□□□ -1.47
FOXA1P55317 AC119403.2-201ENST00000590960 598 ntBASIC5.85□□□□□ -1.47
FOXA1P55317 AC097467.3-215ENST00000609486 793 ntTSL 5 BASIC5.85□□□□□ -1.47
FOXA1P55317 AC097467.3-214ENST00000610249 843 ntTSL 5 BASIC5.85□□□□□ -1.47
FOXA1P55317 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC5.85□□□□□ -1.47
FOXA1P55317 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC5.85□□□□□ -1.47
FOXA1P55317 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
FOXA1P55317 AC027575.3-201ENST00000583058 2747 ntBASIC5.85□□□□□ -1.47
FOXA1P55317 REG1CP-201ENST00000377435 1705 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
FOXA1P55317 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC5.85□□□□□ -1.47
FOXA1P55317 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
FOXA1P55317 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
FOXA1P55317 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
FOXA1P55317 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
FOXA1P55317 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC5.84□□□□□ -1.47
FOXA1P55317 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
FOXA1P55317 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
FOXA1P55317 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
FOXA1P55317 OCM2-201ENST00000257627 696 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
FOXA1P55317 RNA5SP110-201ENST00000362638 115 ntBASIC5.84□□□□□ -1.47
FOXA1P55317 RNU105B-201ENST00000364478 208 ntBASIC5.84□□□□□ -1.47
FOXA1P55317 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
FOXA1P55317 PRELID1P1-201ENST00000403549 660 ntBASIC5.84□□□□□ -1.47
FOXA1P55317 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
FOXA1P55317 AC073410.1-201ENST00000435125 589 ntBASIC5.84□□□□□ -1.47
FOXA1P55317 AC010086.1-201ENST00000437359 1052 ntBASIC5.84□□□□□ -1.47
FOXA1P55317 ZNF619P1-201ENST00000446539 752 ntBASIC5.84□□□□□ -1.47
FOXA1P55317 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC5.84□□□□□ -1.47
FOXA1P55317 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC5.84□□□□□ -1.47
FOXA1P55317 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC5.84□□□□□ -1.47
FOXA1P55317 AC090958.1-201ENST00000511122 351 ntBASIC5.84□□□□□ -1.47
FOXA1P55317 RN7SKP288-201ENST00000516227 268 ntBASIC5.84□□□□□ -1.47
FOXA1P55317 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.84□□□□□ -1.47
FOXA1P55317 BICD1-206ENST00000551086 423 ntTSL 3 BASIC5.84□□□□□ -1.47
FOXA1P55317 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
FOXA1P55317 AC005180.2-201ENST00000585620 562 ntTSL 3 BASIC5.84□□□□□ -1.47
FOXA1P55317 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC5.84□□□□□ -1.47
FOXA1P55317 AP001823.1-201ENST00000604056 1003 ntBASIC5.84□□□□□ -1.47
FOXA1P55317 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC5.84□□□□□ -1.47
FOXA1P55317 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC5.84□□□□□ -1.47
FOXA1P55317 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC5.84□□□□□ -1.47
FOXA1P55317 AC011346.1-204ENST00000638089 1210 ntAPPRIS P5 TSL 3 BASIC5.84□□□□□ -1.47
FOXA1P55317 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC5.84□□□□□ -1.47
FOXA1P55317 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
FOXA1P55317 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
FOXA1P55317 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
FOXA1P55317 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
FOXA1P55317 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
FOXA1P55317 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
FOXA1P55317 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
FOXA1P55317 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
FOXA1P55317 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms